WormBase Tree Display for Gene: WBGene00021483
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| WBGene00021483 | SMap | S_parent | Sequence | Y40A1A | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | Sequence_name | Y40A1A.1 | ||||||||
| Molecular_name | Y40A1A.1 | |||||||||
| Other_name | CELE_Y40A1A.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | Y40A1A.1 | |||||||||
| DB_info | Database | AceView | gene | XC621 | ||||||
| WormQTL | gene | WBGene00021483 | ||||||||
| WormFlux | gene | WBGene00021483 | ||||||||
| NDB | locus_tag | CELE_Y40A1A.1 | ||||||||
| NCBI | gene | 189776 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 15 Dec 2014 16:28:48 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Allele (30) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00191525 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00191802 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00124579 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00062713 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00074747 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00211163 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | |||||||
| Paralog | WBGene00017729 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WBGene00021214 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| Structured_description | Concise_description | Y40A1A.1 has been annotated as a pseudogene; Y40A1A.1 and F22H10.5 contain sequence similarity to haspin kinase genes hasp-1 and hasp-2, but as pseudogenes have not been officially named and added to the hasp gene class. | Person_evidence | WBPerson1983 | ||||||
| Curator_confirmed | WBPerson1843 | |||||||||
| Date_last_updated | 19 Dec 2014 00:00:00 | |||||||||
| Automated_description | Enriched in Z1 and Z4 based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and pgl-1 based on RNA-seq and microarray studies. Is affected by multi-walled carbon nanotube based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | Y40A1A.1:wp97 | ||||||||
| Y40A1A.1:wp246 | ||||||||||
| Corresponding_pseudogene | Y40A1A.1 | |||||||||
| Associated_feature | WBsf1004199 | |||||||||
| WBsf1022392 | ||||||||||
| Experimental_info | Expr_pattern | Expr1159788 | ||||||||
| Microarray_results | 176421_at | |||||||||
| GPL19516_CGZ0045049 | ||||||||||
| GPL21109_Y40A1A.1 | ||||||||||
| GPL8304_CE_WBGene00021483_A | ||||||||||
| GPL8304_CE_WBGene00021483_B | ||||||||||
| GPL8673_Y40A1A_1P00202 | ||||||||||
| GPL8673_Y40A1A_1P00353 | ||||||||||
| GPL9450_Y40A1A.1 | ||||||||||
| cea2.i.57977 | ||||||||||
| Expression_cluster (33) | ||||||||||
| Map_info | Positive | Positive_clone | Y40A1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Interpolated_map_position | X | -17.0912 | ||||||||
| Reference | WBPaper00027258 | |||||||||
| WBPaper00038491 | ||||||||||
| Method | Gene |
