WormBase Tree Display for Gene: WBGene00021476
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| WBGene00021476 | SMap | S_parent | Sequence | Y39G10AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nsun-4 | Person_evidence | WBPerson8352 | |||||
| Sequence_name | Y39G10AR.21 | ||||||||
| Molecular_name | Y39G10AR.21a | ||||||||
| Y39G10AR.21a.1 | |||||||||
| CE28981 | |||||||||
| Y39G10AR.21b | |||||||||
| CE49666 | |||||||||
| Y39G10AR.21c | |||||||||
| CE49707 | |||||||||
| Y39G10AR.21b.1 | |||||||||
| Y39G10AR.21c.1 | |||||||||
| Other_name | CELE_Y39G10AR.21 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nsun-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Feb 2015 13:16:53 | WBPerson2970 | Name_change | CGC_name | nsun-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nsun | ||||||||
| Allele (64) | |||||||||
| Strain | WBStrain00055506 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP1040 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00021686 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | Y39G10AR.21 is orthologous to human NSUN4, a putative S-adenosyl-L-methionine-dependent methyl-transferase. | Curator_confirmed | WBPerson324 | |||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 30 May 2012 00:00:00 | ||||||||
| Automated_description | Enables rRNA (cytosine-C5-)-methyltransferase activity and tRNA (cytosine-5-)-methyltransferase activity. Predicted to be involved in rRNA methylation and tRNA methylation. Predicted to be located in mitochondrion. Is an ortholog of human NSUN4 (NOP2/Sun RNA methyltransferase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39G10AR.21a | |||||||
| Y39G10AR.21b | |||||||||
| Y39G10AR.21c | |||||||||
| Corresponding_transcript | Y39G10AR.21a.1 | ||||||||
| Y39G10AR.21b.1 | |||||||||
| Y39G10AR.21c.1 | |||||||||
| Other_sequence (36) | |||||||||
| Associated_feature | WBsf655767 | ||||||||
| WBsf656061 | |||||||||
| WBsf982844 | |||||||||
| WBsf982845 | |||||||||
| WBsf1009318 | |||||||||
| WBsf217292 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056274 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004599 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021465 | ||||||||
| Expr1039387 | |||||||||
| Expr1159756 | |||||||||
| Expr2014504 | |||||||||
| Expr2032743 | |||||||||
| Drives_construct | WBCnstr00024538 | ||||||||
| Construct_product | WBCnstr00024538 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (89) | |||||||||
| SAGE_tag | SAGE:acactccact | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:acactccactgggagcc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ggggtactgc | Strand | Antisense | |||||||
| SAGE:agatttcaaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gaaacgatagaggcctg | Strand | Antisense | |||||||
| SAGE:gaaacgatag | Strand | Antisense | |||||||
| SAGE:ggggtactgcataaata | Strand | Antisense | |||||||
| SAGE:cttaaccttt | Strand | Antisense | |||||||
| Interaction (62) | |||||||||
| Map_info | Positive | Positive_clone | Y39G10AR | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -9.42428 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060731 | |||||||||
| WBPaper00060738 | |||||||||
| Method | Gene |
