WormBase Tree Display for Gene: WBGene00021476
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WBGene00021476 | SMap | S_parent | Sequence | Y39G10AR | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | nsun | |||||
Allele (64) | ||||||
Strain | WBStrain00055506 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation (13) | ||||||
Contained_in_operon | CEOP1040 | |||||
Ortholog (34) | ||||||
Paralog | WBGene00021686 | Caenorhabditis elegans | From_analysis | Panther | ||
WormBase-Compara | ||||||
Structured_description | Concise_description | Y39G10AR.21 is orthologous to human NSUN4, a putative S-adenosyl-L-methionine-dependent methyl-transferase. | Curator_confirmed | WBPerson324 | ||
WBPerson1823 | ||||||
WBPerson567 | ||||||
Date_last_updated | 30 May 2012 00:00:00 | |||||
Automated_description | Enables rRNA (cytosine-C5-)-methyltransferase activity and tRNA (cytosine-5-)-methyltransferase activity. Predicted to be involved in rRNA methylation and tRNA methylation. Predicted to be located in mitochondrion. Is an ortholog of human NSUN4 (NOP2/Sun RNA methyltransferase 4). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | Y39G10AR.21a | ||||
Y39G10AR.21b | ||||||
Y39G10AR.21c | ||||||
Corresponding_transcript | Y39G10AR.21a.1 | |||||
Y39G10AR.21b.1 | ||||||
Y39G10AR.21c.1 | ||||||
Other_sequence (36) | ||||||
Associated_feature | WBsf655767 | |||||
WBsf656061 | ||||||
WBsf982844 | ||||||
WBsf982845 | ||||||
WBsf1009318 | ||||||
WBsf217292 | ||||||
Experimental_info | RNAi_result | WBRNAi00056274 | Inferred_automatically | RNAi_primary | ||
WBRNAi00004599 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1021465 | |||||
Expr1039387 | ||||||
Expr1159756 | ||||||
Expr2014504 | ||||||
Expr2032743 | ||||||
Drives_construct | WBCnstr00024538 | |||||
Construct_product | WBCnstr00024538 | |||||
Microarray_results (20) | ||||||
Expression_cluster (89) | ||||||
SAGE_tag | SAGE:acactccact | Strand | Sense | |||
Unambiguously_mapped | ||||||
SAGE:acactccactgggagcc | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:ggggtactgc | Strand | Antisense | ||||
SAGE:agatttcaaa | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:gaaacgatagaggcctg | Strand | Antisense | ||||
SAGE:gaaacgatag | Strand | Antisense | ||||
SAGE:ggggtactgcataaata | Strand | Antisense | ||||
SAGE:cttaaccttt | Strand | Antisense | ||||
Interaction (62) | ||||||
Map_info | Positive | Positive_clone | Y39G10AR | Inferred_automatically | From sequence, transcript, pseudogene data | |
Interpolated_map_position | I | -9.42428 | ||||
Reference | WBPaper00038491 | |||||
WBPaper00055090 | ||||||
WBPaper00060731 | ||||||
WBPaper00060738 | ||||||
Method | Gene |