WormBase Tree Display for Gene: WBGene00021401
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| WBGene00021401 | Evidence | Paper_evidence | WBPaper00006517 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y38C1AA | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | prdx-6 | Paper_evidence | WBPaper00006517 | |||||
| Sequence_name | Y38C1AA.11 | ||||||||
| Molecular_name | Y38C1AA.11 | ||||||||
| Y38C1AA.11.1 | |||||||||
| CE31640 | |||||||||
| Other_name | ceprx3 | Paper_evidence | WBPaper00006517 | ||||||
| Y38C1AA.j | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y38C1AA.11 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | prdx-6 | ||||||||
| DB_info | Database | AceView | gene | 4A973 | |||||
| WormQTL | gene | WBGene00021401 | |||||||
| WormFlux | gene | WBGene00021401 | |||||||
| NDB | locus_tag | CELE_Y38C1AA.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021401|UniProtKB=Q8MXT1 | |||||||
| family | PTHR43503 | ||||||||
| NCBI | gene | 176837 | |||||||
| RefSeq | protein | NM_171241.5 | |||||||
| TREEFAM | TREEFAM_ID | TF105183 | |||||||
| TrEMBL | UniProtAcc | Q8MXT1 | |||||||
| UniProt_GCRP | UniProtAcc | Q8MXT1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 14 Jun 2006 08:38:48 | WBPerson2970 | Name_change | CGC_name | prdx-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prdx | ||||||||
| Allele (26) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00084703 | ||||||||
| 00084704 | |||||||||
| 00084705 | |||||||||
| 00084706 | |||||||||
| 00084707 | |||||||||
| 00084708 | |||||||||
| 00084709 | |||||||||
| 00125760 | |||||||||
| 00125761 | |||||||||
| 00125762 | |||||||||
| Contained_in_operon | CEOP4636 | ||||||||
| CEOP4007 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00006434 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00011110 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable peroxiredoxin activity. Predicted to be involved in cell redox homeostasis. Predicted to be located in cytosol and mitochondrion. Is an ortholog of human PRDX6 (peroxiredoxin 6). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38C1AA.11 | |||||||
| Corresponding_transcript | Y38C1AA.11.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf995098 | ||||||||
| WBsf1016512 | |||||||||
| WBsf1016513 | |||||||||
| WBsf1016514 | |||||||||
| WBsf227816 | |||||||||
| Experimental_info | Expr_pattern | Expr1013926 | |||||||
| Expr1039348 | |||||||||
| Expr1159499 | |||||||||
| Expr2015089 | |||||||||
| Expr2033326 | |||||||||
| Antibody | WBAntibody00000737 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (84) | |||||||||
| Map_info | Map | IV | Position | -26.8083 | Error | 0.006782 | |||
| Positive | Positive_clone | Y38C1AA | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064988 | |||||||||
| WBPaper00065026 | |||||||||
| Remark | prdx-6 was previously incorrectly connected to Y38C1AA.1 (WBGene00021394) | Curator_confirmed | WBPerson2970 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
