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WormBase Tree Display for Gene: WBGene00021400

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Name Class

WBGene00021400SMapS_parentSequenceY38C1AA
IdentityVersion2
NameCGC_namegegf-1Person_evidenceWBPerson260
Sequence_nameY38C1AA.9
Molecular_nameY38C1AA.9
Y38C1AA.9.1
CE25243
Other_nameY38C1AA.bCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y38C1AA.9Accession_evidenceNDBBX284604
Public_namegegf-1
DB_infoDatabaseAceViewgene4A906
WormQTLgeneWBGene00021400
WormFluxgeneWBGene00021400
NDBlocus_tagCELE_Y38C1AA.9
PanthergeneCAEEL|WormBase=WBGene00021400|UniProtKB=Q9N432
familyPTHR24044
NCBIgene189642
RefSeqproteinNM_067470.3
TrEMBLUniProtAccQ9N432
UniProt_GCRPUniProtAccQ9N432
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
212 Jan 2023 20:48:33WBPerson51134Name_changeCGC_namegegf-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgegf
Allele (22)
RNASeq_FPKM (74)
Ortholog (28)
ParalogWBGene00000185Caenorhabditis elegansFrom_analysisPanther
WBGene00001148Caenorhabditis elegansFrom_analysisPanther
WBGene00001609Caenorhabditis elegansFrom_analysisPanther
WBGene00004963Caenorhabditis elegansFrom_analysisPanther
WBGene00012917Caenorhabditis elegansFrom_analysisPanther
WBGene00018041Caenorhabditis elegansFrom_analysisPanther
WBGene00019901Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionAutomated_descriptionEnriched in ABplpppppp; ABprpppppp; neuronal sheath cell; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including rotenone; D-glucose; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: EGF-like domain and Phosphorylation site.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY38C1AA.9
Corresponding_transcriptY38C1AA.9.1
Other_sequence (9)
Associated_featureWBsf995080
WBsf995081
WBsf1016499
WBsf1016500
WBsf229649
Experimental_infoRNAi_resultWBRNAi00036826Inferred_automaticallyRNAi_primary
WBRNAi00055991Inferred_automaticallyRNAi_primary
WBRNAi00070197Inferred_automaticallyRNAi_primary
Expr_patternExpr1021617
Expr1159509
Expr2007295
Expr2025528
Microarray_results (14)
Expression_clusterWBPaper00024970:GABAergic_neuron_specific
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032031:DConiospora_downregulated_OligoArray_24h
WBPaper00037950:CEP-sheath-cells_adult_enriched
WBPaper00037950:CEP-sheath-cells_adult_SelectivelyEnriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00042561:smgl-2(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045774:clk-1_upregulated
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00048988:neuron_expressed
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050344:PLM-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053599:female_vs_male_downregulated
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054191:H3.3(null)_embryo_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:hmg-4(RNAi)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055648:male-CEM-neurons_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055897:heat-shock_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056169:rrf-3(pk1426)_upregulated_L3
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056617:adr-1_upregulated_embryo_transcript
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058927:high-redox-state_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00061340:ILsh_OLLsh_OLQsh
WBPaper00061340:Parent_of_tail_spike_and_hyp10
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061527:T20B5.2-W07B8.3_16060
WBPaper00061651:CEPsh_enriched
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062118:neural-HSF-1_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062497:xpf-1(tm2842)_upregulated
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064005:starvation_downregulated_N2_protein
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065623:39
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065841:5_0
WBPaper00065841:5_1
WBPaper00065841:37_0
WBPaper00065841:141_0
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript
WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00025141:N2_Expressed_Genes
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00034739:N2moreDR1350
WBPaper00036286:Pattern_F
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00040876:mir-35_downregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00045865:biofilm_downregulated_B
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00053236:Starvation_regulated_GR1307
Map_infoPositivePositive_cloneY38C1AAInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV-26.8853
MethodGene