WormBase Tree Display for Gene: WBGene00021334
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| WBGene00021334 | SMap | S_parent | Sequence | Y34D9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | vps-4 | |||||||
| Sequence_name | Y34D9A.10 | ||||||||
| Molecular_name | Y34D9A.10 | ||||||||
| Y34D9A.10.1 | |||||||||
| CE39043 | |||||||||
| Other_name | phi-25 | Person_evidence | WBPerson2582 | ||||||
| Y34D9A.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y34D9A.10 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | vps-4 | ||||||||
| DB_info | Database | AceView | gene | 1B526 | |||||
| WormQTL | gene | WBGene00021334 | |||||||
| WormFlux | gene | WBGene00021334 | |||||||
| NDB | locus_tag | CELE_Y34D9A.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021334|UniProtKB=Q9BL83 | |||||||
| family | PTHR23074 | ||||||||
| NCBI | gene | 189590 | |||||||
| RefSeq | protein | NM_058415.9 | |||||||
| TREEFAM | TREEFAM_ID | TF105012 | |||||||
| TrEMBL | UniProtAcc | Q9BL83 | |||||||
| UniProt_GCRP | UniProtAcc | Q9BL83 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-25 | ||||
| 3 | 13 Apr 2007 17:26:35 | WBPerson2970 | Name_change | CGC_name | vps-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (383) | |||||||||
| Strain | WBStrain00051385 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00091976 | ||||||||
| 00091977 | |||||||||
| 00091978 | |||||||||
| 00091979 | |||||||||
| 00091980 | |||||||||
| 00091981 | |||||||||
| 00091982 | |||||||||
| 00091983 | |||||||||
| 00125712 | |||||||||
| 00125713 | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00003183 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010047 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00011175 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00016045 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017981 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010557 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity and ATP hydrolysis activity. Involved in mechanosensory behavior and protein localization to postsynaptic membrane. Predicted to be located in endosome membrane. Is an ortholog of human VPS4A (vacuolar protein sorting 4 homolog A) and VPS4B (vacuolar protein sorting 4 homolog B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y34D9A.10 | |||||||
| Corresponding_CDS_history | Y34D9A.10:wp124 | ||||||||
| Y34D9A.10:wp147 | |||||||||
| Corresponding_transcript | Y34D9A.10.1 | ||||||||
| Other_sequence (77) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result (27) | ||||||||
| Expr_pattern | Expr15009 | ||||||||
| Expr1025266 | |||||||||
| Expr1039307 | |||||||||
| Expr1159355 | |||||||||
| Expr2018032 | |||||||||
| Expr2036169 | |||||||||
| Construct_product | WBCnstr00001340 | ||||||||
| WBCnstr00040059 | |||||||||
| WBCnstr00041860 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (113) | |||||||||
| Map_info | Map | I | Position | -17.102 | Error | 0.066392 | |||
| Positive | Positive_clone | Y34D9A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
