WormBase Tree Display for Gene: WBGene00021293

WBGene00021293 SMap: S_parent: Sequence: Y25C1A
  Identity: Version: 1
    Name: Sequence_name: Y25C1A.6
      Molecular_name: Y25C1A.6
        Y25C1A.6.1
        CE21473
      Other_name: CELE_Y25C1A.6 Accession_evidence: NDB BX284602
      Public_name: Y25C1A.6
    DB_info: Database: AceView gene 2D349
        WormQTL gene WBGene00021293
        WormFlux gene WBGene00021293
        NDB locus_tag CELE_Y25C1A.6
        NCBI gene 173653
        RefSeq protein NM_062036.8
        TrEMBL UniProtAcc Q9TYM3
        UniProt_GCRP UniProtAcc Q9TYM3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (46)
    RNASeq_FPKM (74)
    Ortholog: chrII_pilon.g3851 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in rect_D based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and sir-2.1 based on microarray; tiling array; and RNA-seq studies. Is affected by seventeen chemicals including hydrogen sulfide; methylmercuric chloride; and Alovudine based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y25C1A.6
    Corresponding_transcript: Y25C1A.6.1
    Associated_feature: WBsf644037
      WBsf644038
      WBsf987144
      WBsf220981
  Experimental_info: RNAi_result: WBRNAi00073346 Inferred_automatically: RNAi_primary
      WBRNAi00061919 Inferred_automatically: RNAi_primary
      WBRNAi00036740 Inferred_automatically: RNAi_primary
      WBRNAi00020140 Inferred_automatically: RNAi_primary
      WBRNAi00055739 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015683
      Expr1039283
      Expr1159258
      Expr2007178
      Expr2025411
    Microarray_results (16)
    Expression_cluster: WBPaper00029047:atx-3_downregulated
      WBPaper00032031:DConiospora_downregulated_cDNA_12h
      WBPaper00032031:DConiospora_downregulated_cDNA_24h
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00035197:fer-1_upregulated
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_downregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_downregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00040285:H2S_12hr_upregulated
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00045618:puf-8_downregulated
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00046805:csr-1(RNAi)_upregulated_Set2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055944:C.butyricum_vs_OP50_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056039:ptl-1(ok621)_upregulated
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057006:DietaryRestriction_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_PA14
      WBPaper00058948:PA14_upregulated
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059373:stt-3(RNAi)_upregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:HB115_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:rect_D
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:Y116A8C.19-F38C2.7
      WBPaper00061952:daf-18(nr2037)_downregulated
      WBPaper00062156:jmjd-5(zr1234)_updownregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062456:doxycycline_downregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064156:lbp-3(overexpress)_downregulated
      WBPaper00064158:xpo-1(RNAi)_downregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064403:Heat-killed-E.Coli_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064939:vit-5(RNAi)_downregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065835:Day5_vs_Day1_upregulated
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066093:E.coli-purE_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      cgc4386_cluster_5_1
      cgc4489_group_9
      WBPaper00025032:cluster_14
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00032062:age_regulated_genes
      WBPaper00034757:down_by_oxidative_stress
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_D
      WBPaper00037695:WC_5-day
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00041906:I-3690_vs_OP50_3d
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00045673:colistin_downregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00048567:dnj-14_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00050538:Fasting_upregulated
      WBPaper00050538:Fasting_upregulated_cholesterol-dependent
      [cgc5767]:cluster_10
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(83_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SET
      [cgc5767]:expression_class_SE_pi(23_min)
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (221)
  Map_info: Positive: Positive_clone: Y25C1A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -8.63169
  Method: Gene