WormBase Tree Display for Gene: WBGene00021205

WBGene00021205 SMap: S_parent: Sequence: Y17G9B
  Identity: Version: 1
    Name: Sequence_name: Y17G9B.8
      Molecular_name: Y17G9B.8
        Y17G9B.8.1
        CE44211
        Y17G9B.8.2
      Other_name: CELE_Y17G9B.8 Accession_evidence: NDB BX284604
      Public_name: Y17G9B.8
    DB_info: Database: AceView gene 4F522
        WormQTL gene WBGene00021205
        WormFlux gene WBGene00021205
        NDB locus_tag CELE_Y17G9B.8
        Panther gene CAEEL|WormBase=WBGene00021205|UniProtKB=Q9N576
          family PTHR21539
        NCBI gene 177246
        RefSeq protein NM_068234.7
        TREEFAM TREEFAM_ID TF314958
        TrEMBL UniProtAcc Q9N576
        UniProt_GCRP UniProtAcc Q9N576
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (26)
    RNASeq_FPKM (74)
    GO_annotation: 00095096
      00095097
      00095098
      00095099
      00125625
    Contained_in_operon: CEOP4673
    Ortholog (35)
    Paralog: WBGene00020673 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable methylated histone binding activity. Predicted to be located in nucleus. Predicted to be part of SAGA complex. Human ortholog(s) of this gene implicated in diabetic retinopathy. Is an ortholog of human SGF29 (SAGA complex associated factor 29). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:8947 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:25156)
  Molecular_info: Corresponding_CDS: Y17G9B.8
    Corresponding_CDS_history: Y17G9B.8:wp102
      Y17G9B.8:wp208
    Corresponding_transcript: Y17G9B.8.1
      Y17G9B.8.2
    Other_sequence (13)
    Associated_feature: WBsf651778
      WBsf651779
      WBsf996387
      WBsf230012
  Experimental_info: RNAi_result: WBRNAi00020094 Inferred_automatically: RNAi_primary
      WBRNAi00020093 Inferred_automatically: RNAi_primary
      WBRNAi00000538 Inferred_automatically: RNAi_primary
      WBRNAi00036688 Inferred_automatically: RNAi_primary
      WBRNAi00055602 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017268
      Expr1039246
      Expr1159109
      Expr2007122
      Expr2025350
    Drives_construct: WBCnstr00024627
    Construct_product: WBCnstr00024627
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032479:CB4856vsN2_LifeStageProfile_Variation
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:AIN_parent
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:Neuroblast_AVG_RIR
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:Neuroblast_URX_CEPDx
      WBPaper00061340:OLL_parent
      WBPaper00061340:OLQ_parent
      WBPaper00061340:Parent_of_MI_pm1DR
      WBPaper00061340:PVQ_parent
      WBPaper00061340:RIA_parent
      WBPaper00061340:RIM_parent
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:F12A10.2-F59E12.6
      WBPaper00061651:VB01_enriched
      WBPaper00062103:neuron_enriched
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00064122:vulva_transcriptome
      WBPaper00064716:paraquat_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00025032:cluster_2
      WBPaper00025099:NI_specific
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027111:rde-3(r459)_upregulated
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00032165:differentially_expressed_with_age_medoid_7
      WBPaper00032948:StarveUp2
      WBPaper00035227:heat_shock_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042234:xpa-1_upregulated
      WBPaper00042274:tbx-2(bx59)_downregulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00053688:E.faecium_upregulated
      [cgc5767]:cluster_2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_E
      [cgc6390]:herm_sex-enriched
  Map_info: Positive: Positive_clone: Y17G9B Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 0.90064
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene