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WormBase Tree Display for Gene: WBGene00021074

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Name Class

WBGene00021074SMapS_parentSequenceW07E6
IdentityVersion2
NameCGC_namegldi-1Person_evidenceWBPerson6609
WBPerson1816
Sequence_nameW07E6.2
Molecular_nameW07E6.2a
W07E6.2a.1
CE17294
W07E6.2b
CE51055
W07E6.2b.1
Other_nameCELE_W07E6.2Accession_evidenceNDBBX284602
Public_namegldi-1
DB_infoDatabaseAceViewgene2A772
WormQTLgeneWBGene00021074
SignaLinkproteinWBGene00021074
WormFluxgeneWBGene00021074
NDBlocus_tagCELE_W07E6.2
PanthergeneCAEEL|WormBase=WBGene00021074|UniProtKB=Q9TYV3
familyPTHR19848
NCBIgene173439
RefSeqproteinNM_001316868.3
NM_061344.5
TrEMBLUniProtAccQ9TYV3
A0A0M9JJ65
UniProt_GCRPUniProtAccQ9TYV3
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
205 May 2023 12:43:53WBPerson51134Name_changeCGC_namegldi-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgldi
AlleleWBVar01499702
WBVar01237529
WBVar01237540
WBVar01291863
WBVar01291864
WBVar01291867
WBVar01291869
WBVar01291870
WBVar01500106
WBVar00354920
WBVar00354921
WBVar00354922
WBVar00354923
WBVar00354924
WBVar00250484
WBVar00354925
WBVar00354926
WBVar00354927
WBVar00354928
WBVar01435403
WBVar01435404
WBVar01623108
WBVar01623109
WBVar00095726
WBVar01623110
WBVar02039931
WBVar02039932
WBVar02039933
WBVar00163116
WBVar00163118
WBVar00163120
WBVar00163121
WBVar00163124
WBVar00009651
WBVar00163125
WBVar00163126
WBVar00009656
WBVar02098991
WBVar00009661
WBVar00009666
WBVar00009671
WBVar00699030
WBVar01932898
WBVar00699031
WBVar00699032
WBVar00543710
WBVar00699033
WBVar00699034
WBVar00699035
WBVar00699036
WBVar00699037
WBVar00699038
WBVar00699039
WBVar00699040
WBVar00699041
WBVar00699042
WBVar00699043
WBVar00699044
WBVar01988612
RNASeq_FPKM (74)
GO_annotation00001779
00001780
00097677
00097678
00097679
Ortholog (38)
Structured_descriptionConcise_descriptionW07E6.2 encodes an ortholog of S. cerevisiae RSA4 that may suppress tumorous growth in the germ line by ensuring robust larval germline proliferation; like PRO-1, -2, and -3, W07E6.2 is probably required for ribosome biogenesis, suggesting a link between biogenesis in the distal sheath and control of cell division in the germ line.Paper_evidenceWBPaper00028280
WBPaper00028933
Curator_confirmedWBPerson567
Date_last_updated23 Apr 2008 00:00:00
Automated_descriptionPredicted to be involved in Notch signaling pathway. Predicted to be located in nucleolus. Is an ortholog of human NLE1 (notchless homolog 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW07E6.2a
W07E6.2b
Corresponding_transcriptW07E6.2a.1
W07E6.2b.1
Other_sequence (55)
Associated_featureWBsf649825
WBsf665327
WBsf665328
WBsf986418
WBsf1011400
WBsf222609
WBsf222610
Experimental_infoRNAi_result (15)
Expr_patternExpr1021160
Expr1039193
Expr1158484
Expr2006840
Expr2025065
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00042477:prp-8(RNAi)_upregulated_RNAseq
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:nucleus_specific
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055354:Allantoin_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056826:SGP_biased
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061340:M_cell
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:trm-1-H43I07.2
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:etr-1(lq61)_downregulated
WBPaper00062520:qui-1(db104)_downregulated
WBPaper00062590:Aging_upregulated_body-wall-muscle
WBPaper00062590:Aging_upregulated_intestine
WBPaper00062590:Aging_upregulated_neuron
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00065258:anchor-cell_depleted
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065841:1_0
WBPaper00065841:11_0
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
WBPaper00065993:glp-1(e2141)_downregulated
cgc4489_group_3
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025032:cluster_7
WBPaper00025141:N2_Expressed_Genes
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00032062:age_regulated_genes
WBPaper00032165:differentially_expressed_with_age_medoid_7
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_E
WBPaper00037695:WC_5-day
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00047070:N2_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:cluster_2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(66_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:intrinsic
Interaction (147)
Map_infoMapIIPosition-15.6026
PositivePositive_cloneW07E6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00028280
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene