Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00020839

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00020839SMapS_parentSequenceT27A3
IdentityVersion2
NameCGC_nameusp-5Person_evidenceWBPerson260
Sequence_nameT27A3.2
Molecular_nameT27A3.2a
T27A3.2a.1
CE30696
T27A3.2b
CE54350
T27A3.2b.1
Other_nameCELE_T27A3.2Accession_evidenceNDBBX284601
Public_nameusp-5
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
228 Sep 2012 14:29:00WBPerson2970Name_changeCGC_nameusp-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classusp
Allele (54)
RNASeq_FPKM (74)
GO_annotation (17)
Ortholog (47)
Paralog (18)
Structured_descriptionAutomated_descriptionPredicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in proteolysis. Predicted to be located in cytosol and nucleus. Is an ortholog of human USP13 (ubiquitin specific peptidase 13) and USP5 (ubiquitin specific peptidase 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST27A3.2a
T27A3.2b
Corresponding_transcriptT27A3.2a.1
T27A3.2b.1
Other_sequence (50)
Associated_featureWBsf983834
WBsf983835
WBsf1009902
WBsf1009903
WBsf217751
Experimental_infoRNAi_resultWBRNAi00026412Inferred_automaticallyRNAi_primary
WBRNAi00113521Inferred_automaticallyRNAi_primary
WBRNAi00116574Inferred_automaticallyRNAi_primary
WBRNAi00026410Inferred_automaticallyRNAi_primary
WBRNAi00004315Inferred_automaticallyRNAi_primary
WBRNAi00054260Inferred_automaticallyRNAi_primary
WBRNAi00076714Inferred_automaticallyRNAi_primary
WBRNAi00026411Inferred_automaticallyRNAi_primary
WBRNAi00094639Inferred_automaticallyRNAi_primary
Expr_patternExpr1028866
Expr1039084
Expr1157807
Expr2017941
Expr2036077
Drives_constructWBCnstr00024847
Construct_productWBCnstr00024847
Microarray_results (20)
Expression_clusterWBPaper00026640:Development_Group_I
WBPaper00028451:Oogenic_protein
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00041072:UTX-1_interacting_protein
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044746:aging_upregulated_Day5
WBPaper00044746:aging_upregulated_HeatShock
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00046421:cdc-48.2(tm659)_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051265:F1_morc-1(tm6048)_downregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053615:SMO-1_target
WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulated
WBPaper00053810:clk-1(qm30)_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055049:S.gordonii_upregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058691:WDR-5.1_interacting_protein
WBPaper00059254:CSR-1_interacting
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059328:mrps-5(RNAi)_downregulated_protein
WBPaper00059763:neuron_expressed
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:Neuroblast_AFD_RMD
WBPaper00061340:Neuroblast_AIZ_FLP_RMG
WBPaper00061340:Neuroblast_PVC_LUA
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061466:nath-10(icb102)_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061527:dld-1-skn-1_16701
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064064:DAF-15_interacting
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064163:ZNFX-1_interacting_embryo
WBPaper00064494:postdauer_downregulated_AWA
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F2
WBPaper00065120:body-muscle-transcriptome
WBPaper00065158:AFD_depleted
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065373:sek-1(km4)_upregulated_Ref
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
WBPaper00025032:cluster_78
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031252:AIN-1_IP_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_1
WBPaper00032948:FedUp
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Fluoranthene_regulated
WBPaper00039866:ClassComp_daf-19_upregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040821:Au-NP_regulated
WBPaper00041002:HQ_3d_2.0mM_Down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(41_min)
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
Interaction (62)
Map_infoMapIPosition0.785773
PositivePositive_cloneT27A3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00030965
WBPaper00038491
WBPaper00055090
WBPaper00061750
WBPaper00064064
WBPaper00064339
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene