WormBase Tree Display for Gene: WBGene00020839
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| WBGene00020839 | SMap | S_parent | Sequence | T27A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | usp-5 | Person_evidence | WBPerson260 | |||||
| Sequence_name | T27A3.2 | ||||||||
| Molecular_name | T27A3.2a | ||||||||
| T27A3.2a.1 | |||||||||
| CE30696 | |||||||||
| T27A3.2b | |||||||||
| CE54350 | |||||||||
| T27A3.2b.1 | |||||||||
| Other_name | CELE_T27A3.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | usp-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Sep 2012 14:29:00 | WBPerson2970 | Name_change | CGC_name | usp-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | usp | ||||||||
| Allele (54) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (47) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Automated_description | Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in proteolysis. Predicted to be located in cytosol and nucleus. Is an ortholog of human USP13 (ubiquitin specific peptidase 13) and USP5 (ubiquitin specific peptidase 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T27A3.2a | |||||||
| T27A3.2b | |||||||||
| Corresponding_transcript | T27A3.2a.1 | ||||||||
| T27A3.2b.1 | |||||||||
| Other_sequence (50) | |||||||||
| Associated_feature | WBsf983834 | ||||||||
| WBsf983835 | |||||||||
| WBsf1009902 | |||||||||
| WBsf1009903 | |||||||||
| WBsf217751 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00026412 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00113521 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116574 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026410 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004315 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054260 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076714 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026411 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094639 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028866 | ||||||||
| Expr1039084 | |||||||||
| Expr1157807 | |||||||||
| Expr2017941 | |||||||||
| Expr2036077 | |||||||||
| Drives_construct | WBCnstr00024847 | ||||||||
| Construct_product | WBCnstr00024847 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (62) | |||||||||
| Map_info | Map | I | Position | 0.785773 | |||||
| Positive | Positive_clone | T27A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030965 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061750 | |||||||||
| WBPaper00064064 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
