WormBase Tree Display for Gene: WBGene00020796

WBGene00020796 SMap: S_parent: Sequence: T25D3
  Identity: Version: 2
    Name: CGC_name: mrpl-28 Person_evidence: WBPerson261
      Sequence_name: T25D3.2
      Molecular_name: T25D3.2
        T25D3.2.1
        CE19599
      Other_name: CELE_T25D3.2 Accession_evidence: NDB BX284602
      Public_name: mrpl-28
    DB_info: Database: AceView gene 2A446
        WormQTL gene WBGene00020796
        WormFlux gene WBGene00020796
        NDB locus_tag CELE_T25D3.2
        Panther gene CAEEL|WormBase=WBGene00020796|UniProtKB=O76606
          family PTHR13528
        NCBI gene 173400
        RefSeq protein NM_061271.6
        TREEFAM TREEFAM_ID TF313040
        TrEMBL UniProtAcc O76606
        UniProt_GCRP UniProtAcc O76606
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrpl-28
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (17)
    RNASeq_FPKM (74)
    GO_annotation: 00038535
      00038536
      00038537
      00038538
      00125353
    Ortholog (33)
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Expressed in hypodermis and pharynx. Is an ortholog of human MRPL28 (mitochondrial ribosomal protein L28). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T25D3.2
    Corresponding_transcript: T25D3.2.1
    Other_sequence (35)
    Associated_feature: WBsf649808
      WBsf717616
      WBsf986334
      WBsf986335
      WBsf986336
      WBsf1011349
      WBsf222568
      WBsf222569
  Experimental_info: RNAi_result: WBRNAi00110747 Inferred_automatically: RNAi_primary
      WBRNAi00026400 Inferred_automatically: RNAi_primary
      WBRNAi00000606 Inferred_automatically: RNAi_primary
      WBRNAi00106865 Inferred_automatically: RNAi_primary
      WBRNAi00009221 Inferred_automatically: RNAi_primary
      WBRNAi00035959 Inferred_automatically: RNAi_primary
      WBRNAi00054130 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13605
      Expr1018650
      Expr1039056
      Expr1157673
      Expr2013710
      Expr2031945
    Drives_construct: WBCnstr00024880
    Construct_product: WBCnstr00024880
    Microarray_results (22)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032425:up_in_zfp-1
      WBPaper00035073:mitochondria_protein
      WBPaper00035211:age-1_vs_N2_downregulated
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050015:ifg-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061527:Y32B12B.2-F28C1.1
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_3
      WBPaper00025032:cluster_46
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_5
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_H
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00037147:heatshock_upregulated
      WBPaper00037695:WC_5-day
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042128:gei-8(ok1671)_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5376]:let-60(G12V)-regulated_genes
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_ME
      [cgc6390]:herm_sex-enriched
    Interaction (27)
  Map_info: Map: II Position: -15.9354 Error: 0.013327
    Positive: Positive_clone: T25D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene