WormBase Tree Display for Gene: WBGene00020717

WBGene00020717 SMap: S_parent: Sequence: T23B12
  Identity: Version: 2
    Name: CGC_name: mrpl-4 Person_evidence: WBPerson261
      Sequence_name: T23B12.2
      Molecular_name: T23B12.2
        T23B12.2.1
        CE14028
      Other_name: CELE_T23B12.2 Accession_evidence: NDB BX284605
      Public_name: mrpl-4
    DB_info: Database: AceView gene 5I949
        WormQTL gene WBGene00020717
        WormFlux gene WBGene00020717
        NDB locus_tag CELE_T23B12.2
        Panther gene CAEEL|WormBase=WBGene00020717|UniProtKB=O17005
          family PTHR10746
        NCBI gene 179230
        RefSeq protein NM_072780.7
        TREEFAM TREEFAM_ID TF313913
        TrEMBL UniProtAcc O17005
        UniProt_GCRP UniProtAcc O17005
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrpl-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (27)
    RNASeq_FPKM (74)
    GO_annotation: 00029142
      00029143
      00029144
      00125291
      00125292
      00125293
    Contained_in_operon: CEOP5192
    Ortholog (34)
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Is an ortholog of human MRPL4 (mitochondrial ribosomal protein L4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T23B12.2
    Corresponding_transcript: T23B12.2.1
    Other_sequence (44)
    Associated_feature: WBsf232113
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr1015278
      Expr1039024
      Expr1157430
      Expr2013726
      Expr2031961
    Drives_construct: WBCnstr00024936
    Construct_product: WBCnstr00024936
    Microarray_results (24)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032425:up_in_zfp-1
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00035073:mitochondria_protein
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-4(RNAi)_downregulated
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_upregulated_protein
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00061340:Pharyngeal_marginal_cell
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:atad-3-mpst-1
      WBPaper00061527:F12A10.2-F59E12.6
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00064071:NHR-49_interacting
      WBPaper00064080:let-7_miRNA_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_downregulated_protein
      WBPaper00064716:paraquat_upregulated
      WBPaper00064992:Eugenol_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_3
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025032:cluster_46
      WBPaper00025032:cluster_160
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00032165:differentially_expressed_with_age_medoid_5
      WBPaper00032948:FedUp
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_E
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00038231:Cry5B_2-fold_downregulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00049538:atfs-1(et18)_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_ME
      [cgc6390]:intrinsic
    SAGE_tag: SAGE:cttccagacg Strand: Sense
        Unambiguously_mapped
      SAGE:tagaaccacgttctcgg Strand: Antisense
      SAGE:cttccagacgcagtcag Strand: Sense
        Unambiguously_mapped
      SAGE:tagaaccacg Strand: Antisense
    Interaction (177)
  Map_info: Map: V Position: 1.41861 Error: 0.002123
    Positive: Positive_clone: T23B12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00062388
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene