WormBase Tree Display for Gene: WBGene00020716

WBGene00020716 SMap: S_parent: Sequence: T23B12
  Identity: Version: 2
    Name: CGC_name: phf-30 Person_evidence: WBPerson260
      Sequence_name: T23B12.1
      Molecular_name: T23B12.1
        T23B12.1.1
        CE14026
      Other_name: CELE_T23B12.1 Accession_evidence: NDB BX284605
      Public_name: phf-30
    DB_info: Database: AceView gene 5I951
        WormQTL gene WBGene00020716
        WormFlux gene WBGene00020716
        NDB locus_tag CELE_T23B12.1
        Panther gene CAEEL|WormBase=WBGene00020716|UniProtKB=O17006
          family PTHR13415
        NCBI gene 188776
        RefSeq protein NM_072781.7
        TREEFAM TREEFAM_ID TF317416
        TrEMBL UniProtAcc O17006
        UniProt_GCRP UniProtAcc O17006
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 14 Oct 2011 15:24:19 WBPerson2970 Name_change: CGC_name: phf-30
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: phf
    Allele (17)
    RNASeq_FPKM (74)
    GO_annotation: 00029145
      00029146
    Contained_in_operon: CEOP5192
    Ortholog (22)
    Paralog: WBGene00018778 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Is an ortholog of human INTS12 (integrator complex subunit 12). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T23B12.1
    Corresponding_transcript: T23B12.1.1
    Other_sequence: CRC07143_1
      CR05055
      CBC12627_1
    Associated_feature: WBsf232114
      WBsf232115
      WBsf232116
    Transcription_factor: WBTranscriptionFactor000488
  Experimental_info: RNAi_result: WBRNAi00062379 Inferred_automatically: RNAi_primary
      WBRNAi00069232 Inferred_automatically: RNAi_primary
      WBRNAi00053881 Inferred_automatically: RNAi_primary
      WBRNAi00113509 Inferred_automatically: RNAi_primary
      WBRNAi00019054 Inferred_automatically: RNAi_primary
      WBRNAi00035833 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020915
      Expr1039023
      Expr1157428
      Expr2014893
      Expr2033128
    Drives_construct: WBCnstr00024937
    Construct_product: WBCnstr00024937
    Microarray_results (21)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050514:CEBP-1_interacting
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055354:Metformin_downregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:Neuroblast_ASG_AWA
      WBPaper00061340:Parents_of_U_F_B_DVA
      WBPaper00061340:Parent_of_PVP_and_rect_V
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:pch-2-B0393.3
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062520:qui-1(db104)_upregulated
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065841:39_0
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00025032:cluster_6
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_N2
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00032165:differentially_expressed_with_age_medoid_5
      WBPaper00034739:N2moreDR1350
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037147:heatshock_upregulated
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_9
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_E
      [cgc6390]:intrinsic
    Interaction: WBInteraction000264542
      WBInteraction000269817
      WBInteraction000273219
      WBInteraction000306860
      WBInteraction000326734
      WBInteraction000361975
      WBInteraction000435813
      WBInteraction000442547
      WBInteraction000527460
      WBInteraction000548696
  Map_info: Map: V Position: 1.4248 Error: 0.002557
    Positive: Positive_clone: T23B12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene