WormBase Tree Display for Gene: WBGene00020711

WBGene00020711 SMap: S_parent: Sequence: T23B3
  Identity: Version: 3
    Name: CGC_name: rmd-5 Person_evidence (2)
      Sequence_name: T23B3.3
      Molecular_name: T23B3.3
      Other_name: CELE_T23B3.3 Accession_evidence: NDB BX284601
      Public_name: rmd-5
    DB_info: Database: AceView gene 1H289
        WormQTL gene WBGene00020711
        WormFlux gene WBGene00020711
        NDB locus_tag CELE_T23B3.3
        NCBI gene 188773
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Nov 2007 10:25:06 WBPerson2970 Name_change: CGC_name: rmd-5
        3 15 Dec 2014 16:26:44 WBPerson1983 Event: Split_into: WBGene00255605
      Split_into: WBGene00255605
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: rmd
    Allele (12)
    RNASeq_FPKM (74)
    Ortholog: WBGene00142298 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00191028 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00138135 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00066579 Caenorhabditis remanei From_analysis: TreeFam
    Paralog: WBGene00007190 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00007786 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00009369 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00011501 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00012976 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00015855 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00018125 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00020070 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Enriched in ASK; OLQ; and neurons based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on RNA-seq and microarray studies. Is affected by multi-walled carbon nanotube; metformin; and cadmium based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: T23B3.3:wp246
    Corresponding_pseudogene: T23B3.3
    Associated_feature: WBsf983983
      WBsf983984
      WBsf1009982
      WBsf1009983
  Experimental_info: Expr_pattern: Expr1025515
      Expr1157439
    Microarray_results: SMD_T23B3.3
      182067_at
      Aff_T23B3.3
      GPL14144_T23B3.3_317-376_0.916_4_A
      GPL19516_CGZ0036194
      GPL21109_T23B3.3
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049377:MWCNT_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051558:aging_regulated
      WBPaper00053368:F.oxysporum_regulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Metformin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00056284:ints-5(RNAi)_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061527:ckr-1-T09B9.3
      WBPaper00061651:ASK_enriched
      WBPaper00061651:OLQ_enriched
      WBPaper00062325:muscle_depleted_noncoding-RNA
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00062590:Aging_upregulated_neuron
      WBPaper00065029:cadmium_downregulated
      WBPaper00065841:63_0
      WBPaper00065841:99_0
      cgc4489_group_11
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00029437:rde-1_upregulated
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
      [cgc6390]:Cluster_D
      [cgc6390]:spermatogenesis-enriched
    Interaction: WBInteraction000342230
      WBInteraction000393808
      WBInteraction000413336
      WBInteraction000442148
      WBInteraction000442266
      WBInteraction000459116
  Map_info: Map: I Position: 1.29443 Error: 0.002145
    Positive: Positive_clone: T23B3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene