WormBase Tree Display for Gene: WBGene00020683
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| WBGene00020683 | SMap | S_parent | Sequence | T22D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ribo-1 | Person_evidence | WBPerson610 | |||||
| Sequence_name | T22D1.4 | ||||||||
| Molecular_name | T22D1.4 | ||||||||
| T22D1.4.1 | |||||||||
| CE33704 | |||||||||
| Other_name | CELE_T22D1.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ribo-1 | ||||||||
| DB_info | Database | AceView | gene | 4H677 | |||||
| WormQTL | gene | WBGene00020683 | |||||||
| WormFlux | gene | WBGene00020683 | |||||||
| NDB | locus_tag | CELE_T22D1.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020683|UniProtKB=Q9GZH4 | |||||||
| family | PTHR21049 | ||||||||
| NCBI | gene | 177456 | |||||||
| RefSeq | protein | NM_068664.7 | |||||||
| SwissProt | UniProtAcc | Q9GZH4 | |||||||
| TREEFAM | TREEFAM_ID | TF312988 | |||||||
| UniProt_GCRP | UniProtAcc | Q9GZH4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 24 Feb 2012 10:16:23 | WBPerson2970 | Name_change | CGC_name | ribo-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ribo | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00093151 | ||||||||
| 00093152 | |||||||||
| 00093153 | |||||||||
| 00093154 | |||||||||
| 00093155 | |||||||||
| 00093156 | |||||||||
| 00093157 | |||||||||
| 00125254 | |||||||||
| 00125255 | |||||||||
| Contained_in_operon | CEOP4204 | ||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00004402 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00004403 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Automated_description | Predicted to be involved in protein N-linked glycosylation via asparagine. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of oligosaccharyltransferase complex. Is an ortholog of human RPN1 (ribophorin I). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T22D1.4 | |||||||
| Corresponding_CDS_history | T22D1.4:wp97 | ||||||||
| Corresponding_transcript | T22D1.4.1 | ||||||||
| Other_sequence (72) | |||||||||
| Associated_feature | WBsf655011 | ||||||||
| WBsf660250 | |||||||||
| WBsf660251 | |||||||||
| WBsf660252 | |||||||||
| WBsf660253 | |||||||||
| WBsf228479 | |||||||||
| WBsf228480 | |||||||||
| WBsf228481 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr1017985 | ||||||||
| Expr1039008 | |||||||||
| Expr1157377 | |||||||||
| Expr2015344 | |||||||||
| Expr2033578 | |||||||||
| Drives_construct | WBCnstr00024964 | ||||||||
| Construct_product | WBCnstr00024964 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction (98) | |||||||||
| Map_info | Map | IV | Position | 3.25 | |||||
| Positive | Positive_clone | T22D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026630 | ||||||||
| WBPaper00029024 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00042421 | |||||||||
| WBPaper00050793 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055674 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
