WormBase Tree Display for Gene: WBGene00020683
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WBGene00020683 | SMap | S_parent | Sequence | T22D1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | ribo-1 | Person_evidence | WBPerson610 | |||
Sequence_name | T22D1.4 | ||||||
Molecular_name | T22D1.4 | ||||||
T22D1.4.1 | |||||||
CE33704 | |||||||
Other_name | CELE_T22D1.4 | Accession_evidence | NDB | BX284604 | |||
Public_name | ribo-1 | ||||||
DB_info | Database | AceView | gene | 4H677 | |||
WormQTL | gene | WBGene00020683 | |||||
WormFlux | gene | WBGene00020683 | |||||
NDB | locus_tag | CELE_T22D1.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00020683|UniProtKB=Q9GZH4 | |||||
family | PTHR21049 | ||||||
NCBI | gene | 177456 | |||||
RefSeq | protein | NM_068664.7 | |||||
SwissProt | UniProtAcc | Q9GZH4 | |||||
TREEFAM | TREEFAM_ID | TF312988 | |||||
UniProt_GCRP | UniProtAcc | Q9GZH4 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ribo | ||||||
Allele (24) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00093151 | ||||||
00093152 | |||||||
00093153 | |||||||
00093154 | |||||||
00093155 | |||||||
00093156 | |||||||
00093157 | |||||||
00125254 | |||||||
00125255 | |||||||
Contained_in_operon | CEOP4204 | ||||||
Ortholog (37) | |||||||
Paralog | WBGene00004402 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00004403 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Structured_description | Automated_description | Predicted to be involved in protein N-linked glycosylation via asparagine. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of oligosaccharyltransferase complex. Is an ortholog of human RPN1 (ribophorin I). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T22D1.4 | |||||
Corresponding_CDS_history | T22D1.4:wp97 | ||||||
Corresponding_transcript | T22D1.4.1 | ||||||
Other_sequence (72) | |||||||
Associated_feature | WBsf655011 | ||||||
WBsf660250 | |||||||
WBsf660251 | |||||||
WBsf660252 | |||||||
WBsf660253 | |||||||
WBsf228479 | |||||||
WBsf228480 | |||||||
WBsf228481 | |||||||
Experimental_info | RNAi_result (15) | ||||||
Expr_pattern | Expr1017985 | ||||||
Expr1039008 | |||||||
Expr1157377 | |||||||
Expr2015344 | |||||||
Expr2033578 | |||||||
Drives_construct | WBCnstr00024964 | ||||||
Construct_product | WBCnstr00024964 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (114) | |||||||
Interaction (98) | |||||||
Map_info | Map | IV | Position | 3.25 | |||
Positive | Positive_clone | T22D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00026630 | ||||||
WBPaper00029024 | |||||||
WBPaper00038491 | |||||||
WBPaper00041771 | |||||||
WBPaper00042421 | |||||||
WBPaper00050793 | |||||||
WBPaper00055090 | |||||||
WBPaper00055674 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |