WormBase Tree Display for Gene: WBGene00020591
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| WBGene00020591 | SMap | S_parent | Sequence | T19H12 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | nhr-220 | Person_evidence | WBPerson600 | ||||||
| Sequence_name | T19H12.8 | |||||||||
| Molecular_name | T19H12.8 | |||||||||
| Other_name | CELE_T19H12.8 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | nhr-220 | |||||||||
| DB_info | Database | AceView | gene | 5F358 | ||||||
| WormQTL | gene | WBGene00020591 | ||||||||
| WormFlux | gene | WBGene00020591 | ||||||||
| NDB | locus_tag | CELE_T19H12.8 | ||||||||
| NCBI | gene | 188618 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-220 | |||||
| 3 | 18 Sep 2014 13:15:33 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | nhr | |||||||||
| Allele (58) | ||||||||||
| Strain | WBStrain00036612 | |||||||||
| WBStrain00036651 | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00031834 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Inparanoid_8 | ||||||||||
| WBGene00080973 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00138671 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00056658 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00164363 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||||
| Paralog (24) | ||||||||||
| Structured_description | Automated_description | Is affected by several genes including hsf-1; eat-2; and sir-2.1 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including methylmercuric chloride; Zidovudine; and Psoralens based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | T19H12.8:wp109 | ||||||||
| T19H12.8:wp245 | ||||||||||
| Corresponding_pseudogene | T19H12.8 | |||||||||
| Associated_feature | WBsf668924 | |||||||||
| WBsf978549 | ||||||||||
| Transcription_factor | WBTranscriptionFactor001062 | |||||||||
| Experimental_info | Expr_pattern | Expr1020469 | ||||||||
| Expr1157132 | ||||||||||
| Microarray_results (15) | ||||||||||
| Expression_cluster (76) | ||||||||||
| Interaction | WBInteraction000178182 | |||||||||
| WBInteraction000178710 | ||||||||||
| WBInteraction000461871 | ||||||||||
| Map_info | Map | V | Position | -3.85098 | Error | 0.025814 | ||||
| Positive | Positive_clone | T19H12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | Multi_point | 5591 | ||||||||
| 4514 | ||||||||||
| 4718 | ||||||||||
| 5661 | ||||||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
