WormBase Tree Display for Gene: WBGene00020562
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| WBGene00020562 | SMap | S_parent | Sequence | T19C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | T19C3.4 | |||||||
| Molecular_name | T19C3.4 | ||||||||
| T19C3.4.1 | |||||||||
| CE02055 | |||||||||
| Other_name | CELE_T19C3.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | T19C3.4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (62) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00055874 | ||||||||
| 00055875 | |||||||||
| 00055876 | |||||||||
| 00055877 | |||||||||
| 00055878 | |||||||||
| 00055879 | |||||||||
| 00055880 | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00011401 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00012180 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015518 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018930 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022452 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022127 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable microtubule binding activity. Predicted to be involved in endoplasmic reticulum tubular network organization. Predicted to be located in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network. Human ortholog(s) of this gene implicated in distal hereditary motor neuronopathy type 5B; hereditary spastic paraplegia 31; and hereditary spastic paraplegia 72. Is an ortholog of human REEP1 (receptor accessory protein 1) and REEP4 (receptor accessory protein 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0015363 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25786) | ||||
| DOID:0110817 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17975) | ||||||
| DOID:0111205 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25786) | ||||||
| DOID:0110782 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25786) | ||||||
| Molecular_info | Corresponding_CDS | T19C3.4 | |||||||
| Corresponding_transcript | T19C3.4.1 | ||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf717855 | ||||||||
| WBsf717856 | |||||||||
| WBsf991105 | |||||||||
| WBsf1014098 | |||||||||
| WBsf226114 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035656 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053507 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006621 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027058 | ||||||||
| Expr1038963 | |||||||||
| Expr1157074 | |||||||||
| Expr2006247 | |||||||||
| Expr2024465 | |||||||||
| Drives_construct | WBCnstr00025049 | ||||||||
| Construct_product | WBCnstr00025049 | ||||||||
| Microarray_results | SMD_T19C3.4 | ||||||||
| 191716_at | |||||||||
| A_12_P115276 | |||||||||
| Aff_T19C3.4 | |||||||||
| GPL13394_WBGene00020562 | |||||||||
| GPL13914_T19C3.4 | |||||||||
| GPL14144_T19C3.4_10-69_0.912_18_B | |||||||||
| GPL14144_T19C3.4_290-349_0.898_23_C | |||||||||
| GPL14144_T19C3.4_372-431_0.956_3_A | |||||||||
| GPL19516_CGZ0035493 | |||||||||
| GPL21109_T19C3.4 | |||||||||
| GPL3518_CE02055 | |||||||||
| GPL8304_CE_WBGene00020562_A | |||||||||
| GPL8673_T19C3_4P00025 | |||||||||
| GPL8673_T19C3_4P00264 | |||||||||
| GPL8673_T19C3_4P00384 | |||||||||
| GPL9450_T19C3.4 | |||||||||
| cea2.p.74031 | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction | WBInteraction000151374 | ||||||||
| WBInteraction000264448 | |||||||||
| WBInteraction000267730 | |||||||||
| WBInteraction000356250 | |||||||||
| WBInteraction000385891 | |||||||||
| WBInteraction000581171 | |||||||||
| Map_info | Positive | Positive_clone | T19C3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -26.5073 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
