WormBase Tree Display for Gene: WBGene00020540

WBGene00020540 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 2
    Name: CGC_name: pals-25 Person_evidence: WBPerson260
      Sequence_name: T17A3.2
      Molecular_name: T17A3.2
        WP:CE37151
        CE37151
        T17A3.2.1
      Other_name: CELE_T17A3.2 Accession_evidence: NDB BX284603
      Public_name: pals-25
    DB_info: Database: AceView gene 3A753
        WormQTL gene WBGene00020540
        WormFlux gene WBGene00020540
        NDB locus_tag CELE_T17A3.2
        NCBI gene 188564
        RefSeq mRNA NM_064752.4
          protein NP_497153.2
            NM_064752.5
        TREEFAM TREEFAM_ID TF343430
        UniProt UniProtAcc Q3V5H4
        TrEMBL UniProtAcc Q3V5H4
        UniProt_GCRP UniProtAcc Q3V5H4
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Oct 2016 09:42:35 WBPerson2970 Name_change: CGC_name: pals-25
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele (150)
    Possibly_affected_by: WBVar02158457
      WBVar02158458
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP3012
    Ortholog (20)
    Paralog: WBGene00008858 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00016216 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00016281 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00022345 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00022337 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022344 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022353 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044761 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00194746 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Expressed in several structures, including nervous system and pharynx. Is predicted to encode a protein with the following domain: Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T17A3.2
    Corresponding_CDS_history: T17A3.2:wp127
    Corresponding_transcript: T17A3.2.1
    Associated_feature: WBsf990990
      WBsf990991
      WBsf990992
      WBsf1014017
      WBsf1014018
      WBsf1014019
      WBsf224336
  Experimental_info: RNAi_result: WBRNAi00053448 Inferred_automatically: RNAi_primary
      WBRNAi00117228 Inferred_automatically: RNAi_primary
      WBRNAi00006589 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr14987
      Expr16351
      Expr1015283
      Expr1038949
      Expr1157017
      Expr2014698
      Expr2032933
    Drives_construct: WBCnstr00025067
      WBCnstr00041834
    Construct_product: WBCnstr00025067
      WBCnstr00042873
      WBCnstr00042874
    Regulate_expr_cluster: WBPaper00056034:pals-25(jy9)_downregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064532:pals-25(jy111)_downregulated
      WBPaper00064532:pals-25(jy111)_upregulated
    Antibody: WBAntibody00003058
    Microarray_results (22)
    Expression_cluster (94)
    Interaction (60)
  Map_info: Map: III Position: -26.9834
    Positive: Positive_clone: T17A3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (14)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene