WormBase Tree Display for Gene: WBGene00020540
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| WBGene00020540 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pals-25 | Person_evidence | WBPerson260 | |||||
| Sequence_name | T17A3.2 | ||||||||
| Molecular_name | T17A3.2 | ||||||||
| WP:CE37151 | |||||||||
| CE37151 | |||||||||
| T17A3.2.1 | |||||||||
| Other_name | CELE_T17A3.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pals-25 | ||||||||
| DB_info | Database | AceView | gene | 3A753 | |||||
| WormQTL | gene | WBGene00020540 | |||||||
| WormFlux | gene | WBGene00020540 | |||||||
| NDB | locus_tag | CELE_T17A3.2 | |||||||
| NCBI | gene | 188564 | |||||||
| RefSeq | mRNA | NM_064752.4 | |||||||
| protein | NP_497153.2 | ||||||||
| NM_064752.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF343430 | |||||||
| UniProt | UniProtAcc | Q3V5H4 | |||||||
| TrEMBL | UniProtAcc | Q3V5H4 | |||||||
| UniProt_GCRP | UniProtAcc | Q3V5H4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Oct 2016 09:42:35 | WBPerson2970 | Name_change | CGC_name | pals-25 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pals | ||||||||
| Allele (150) | |||||||||
| Possibly_affected_by | WBVar02158457 | ||||||||
| WBVar02158458 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP3012 | ||||||||
| Ortholog (20) | |||||||||
| Paralog | WBGene00008858 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00016216 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00016281 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00022345 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00022337 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022344 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022353 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044761 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00194746 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Expressed in several structures, including nervous system and pharynx. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T17A3.2 | |||||||
| Corresponding_CDS_history | T17A3.2:wp127 | ||||||||
| Corresponding_transcript | T17A3.2.1 | ||||||||
| Associated_feature | WBsf990990 | ||||||||
| WBsf990991 | |||||||||
| WBsf990992 | |||||||||
| WBsf1014017 | |||||||||
| WBsf1014018 | |||||||||
| WBsf1014019 | |||||||||
| WBsf224336 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00053448 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00117228 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006589 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14987 | ||||||||
| Expr16351 | |||||||||
| Expr1015283 | |||||||||
| Expr1038949 | |||||||||
| Expr1157017 | |||||||||
| Expr2014698 | |||||||||
| Expr2032933 | |||||||||
| Drives_construct | WBCnstr00025067 | ||||||||
| WBCnstr00041834 | |||||||||
| Construct_product | WBCnstr00025067 | ||||||||
| WBCnstr00042873 | |||||||||
| WBCnstr00042874 | |||||||||
| Regulate_expr_cluster | WBPaper00056034:pals-25(jy9)_downregulated | ||||||||
| WBPaper00056034:pals-25(jy9)_upregulated | |||||||||
| WBPaper00064532:pals-25(icb98)_downregulated | |||||||||
| WBPaper00064532:pals-25(icb98)_upregulated | |||||||||
| WBPaper00064532:pals-25(jy111)_downregulated | |||||||||
| WBPaper00064532:pals-25(jy111)_upregulated | |||||||||
| Antibody | WBAntibody00003058 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (60) | |||||||||
| Map_info | Map | III | Position | -26.9834 | |||||
| Positive | Positive_clone | T17A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00051658 | ||||||||
| WBPaper00056034 | |||||||||
| WBPaper00057437 | |||||||||
| WBPaper00059442 | |||||||||
| WBPaper00060871 | |||||||||
| WBPaper00061319 | |||||||||
| WBPaper00061877 | |||||||||
| WBPaper00062345 | |||||||||
| WBPaper00062564 | |||||||||
| WBPaper00062909 | |||||||||
| WBPaper00062920 | |||||||||
| WBPaper00064105 | |||||||||
| WBPaper00064532 | |||||||||
| WBPaper00065984 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
