WormBase Tree Display for Gene: WBGene00020528

WBGene00020528 SMap: S_parent: Sequence: T15B7
  Identity: Version: 2
    Name: CGC_name: lgc-54 Person_evidence: WBPerson2536
            WBPerson1430
      Sequence_name: T15B7.16
      Molecular_name: T15B7.16
        T15B7.16.1
        CE52266
      Other_name: CELE_T15B7.16 Accession_evidence: NDB BX284605
      Public_name: lgc-54
    DB_info: Database: AceView gene 5H320
        WormQTL gene WBGene00020528
        WormFlux gene WBGene00020528
        NDB locus_tag CELE_T15B7.16
        Panther gene CAEEL|WormBase=WBGene00020528|UniProtKB=O17041
          family PTHR18945
        NCBI gene 188525
        RefSeq protein NM_001356670.2
        TREEFAM TREEFAM_ID TF315490
        TrEMBL UniProtAcc O17041
        UniProt_GCRP UniProtAcc O17041
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 Jan 2008 14:49:34 WBPerson2970 Name_change: CGC_name: lgc-54
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    Allele (81)
    RNASeq_FPKM (74)
    GO_annotation (18)
    Ortholog (29)
    Paralog (100)
    Structured_description: Automated_description: Predicted to enable transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in neuron projection and synapse. Expressed in AVEL; AVER; RMHL; and RMHR. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T15B7.16
    Corresponding_CDS_history: T15B7.16:wp221
      T15B7.16:wp261
    Corresponding_transcript: T15B7.16.1
    Other_sequence: JI173495.1
      Tcol_isotig17018
      Tcir_isotig25611
      CBC07593_1
    Associated_feature: WBsf669080
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr15854
      Expr1025395
      Expr1156943
      Expr2013134
      Expr2031366
    Drives_construct: WBCnstr00042564
    Construct_product: WBCnstr00042564
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:Cluster_5
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:AVE-neuron_embryo_enriched
      WBPaper00037950:AVE-neuron_embryo_SelectivelyEnriched
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_SelectivelyEnriched
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00047131:daf-2(e1370)_downregulated_N2-background
      WBPaper00048988:daf-2(e1370)_daf-16(mu86)_downregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055941:atfs-1(et15)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056073:R24_upregulated_nhr-86_dependent
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
      WBPaper00057265:metaformin_upregulated_OP50
      WBPaper00057265:metaformin_upregulated_OP50-MR
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058948:PA14_upregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059117:B.subtilis_downregulated
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059253:sucrose_stearic-acid_upregulated
      WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
      WBPaper00059895:wounding_downregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060703:nas-38(ok3407)_downregulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:HB115_downregulated
      WBPaper00061340:RMD
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:172183_at-176110_at
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_downregulated
      WBPaper00061952:daf-18(nr2037)_upregulated
      WBPaper00061952:daf-18(yh1)_upregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062184:PA14_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_downregulated_zip-1(jy13)
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064632:daf-2(e1370)_downregulated_intestine
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064661:lpd-3(ok2138)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064871:PA14-gacA()_downregulated_AWA
      WBPaper00064871:PA14_downregulated_AWA
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065005:sams-3(RNAi)_downregulated
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected
      WBPaper00065841:36_2
      WBPaper00065841:36_3
      WBPaper00065841:48_0
      WBPaper00065841:52_0
      WBPaper00065841:75_0
      WBPaper00065841:91_0
      WBPaper00065841:94_0
      WBPaper00065841:98_0
      WBPaper00065841:107_0
      WBPaper00065841:109_0
      WBPaper00065841:118_0
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      cgc4489_group_2
      cgc4489_group_14
      WBPaper00005124:progesterone_10-7M_regulated
      WBPaper00025099:MA_specific
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026629:L2_male_enriched
      WBPaper00026980:intestine_enriched
      WBPaper00029437:dcr-1_downregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_G
      WBPaper00040985:AIN-2_L4_intestine
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00042236:flcn-1(ok975)_upregulated
      WBPaper00042258:DA1877_downregulated_GravidAdult
      WBPaper00044091:Bpseudomallei_repressed_12h
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00050650:mBmkTX_downregulated
      WBPaper00055899:2,4-Dinitroanisole_regulated
      WBPaper00057098:SiO2-nanoparticles_downregulated
      [cgc6390]:herm_soma-enriched
    Interaction: WBInteraction000371751
      WBInteraction000371923
      WBInteraction000376574
  Map_info: Map: V Position: 0.342838 Error: 0.004883
    Positive: Positive_clone: T15B7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
    WBPaper00058535
    WBPaper00062422
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene