WormBase Tree Display for Gene: WBGene00020509
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WBGene00020509 | SMap | S_parent | Sequence | T14F9 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | hex-1 | Person_evidence | WBPerson2099 | |||||
Sequence_name | T14F9.3 | ||||||||
Molecular_name | T14F9.3 | ||||||||
T14F9.3.1 | |||||||||
CE07499 | |||||||||
T14F9.3.2 | |||||||||
Other_name | CELE_T14F9.3 | Accession_evidence | NDB | BX284606 | |||||
Public_name | hex-1 | ||||||||
DB_info | Database (13) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 19 Jul 2007 09:29:24 | WBPerson2970 | Name_change | CGC_name | hex-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hex | ||||||||
Allele (68) | |||||||||
Strain | WBStrain00002884 | ||||||||
In_cluster | conserved_RDE-1_cluster | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (21) | |||||||||
Ortholog (41) | |||||||||
Structured_description | Concise_description | hex-1 encodes a beta-N-acetylhexosaminidase that is orthologous to the human gene CERVICAL CANCER PROTO-ONCOGENE 7 (HEXB; OMIM:606873), which when mutated leads to disease. | Paper_evidence | WBPaper00030867 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson1823 | |||||||||
WBPerson567 | |||||||||
Date_last_updated | 23 Jul 2007 00:00:00 | ||||||||
Automated_description | Enables beta-N-acetylhexosaminidase activity. Involved in carbohydrate metabolic process. Predicted to be located in lysosome and membrane. Expressed in coelomocyte and pharyngeal neurons. Human ortholog(s) of this gene implicated in Sandhoff disease; Tay-Sachs disease; and spinal muscular atrophy. Is an ortholog of human HEXA (hexosaminidase subunit alpha) and HEXB (hexosaminidase subunit beta). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:12377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4879) | ||||
DOID:3323 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4879) | ||||||
DOID:3320 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4878) | ||||||
Molecular_info | Corresponding_CDS | T14F9.3 | |||||||
Corresponding_transcript | T14F9.3.1 | ||||||||
T14F9.3.2 | |||||||||
Other_sequence (41) | |||||||||
Associated_feature | WBsf655166 | ||||||||
WBsf662510 | |||||||||
WBsf662511 | |||||||||
WBsf1004268 | |||||||||
WBsf235376 | |||||||||
Experimental_info | RNAi_result | WBRNAi00053327 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00018714 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00035568 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1816 | ||||||||
Expr4821 | |||||||||
Expr6695 | |||||||||
Expr1019152 | |||||||||
Expr1038942 | |||||||||
Expr1156913 | |||||||||
Expr2012401 | |||||||||
Expr2030637 | |||||||||
Drives_construct | WBCnstr00003403 | ||||||||
WBCnstr00004955 | |||||||||
WBCnstr00025086 | |||||||||
Construct_product | WBCnstr00025086 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (276) | |||||||||
Interaction (124) | |||||||||
Map_info | Map | X | Position | -16.3239 | Error | 0.135409 | |||
Positive | Positive_clone | T14F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00030867 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00059755 | |||||||||
WBPaper00062715 | |||||||||
WBPaper00065036 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |