WormBase Tree Display for Gene: WBGene00020398
expand all nodes | collapse all nodes | view schema
| WBGene00020398 | SMap | S_parent | Sequence | T10B11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cerk-1 | Person_evidence | WBPerson237 | |||||
| Sequence_name | T10B11.2 | ||||||||
| Molecular_name | T10B11.2 | ||||||||
| T10B11.2.1 | |||||||||
| CE18241 | |||||||||
| Other_name | CELE_T10B11.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | cerk-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 Oct 2016 12:14:59 | WBPerson2970 | Name_change | CGC_name | cerk-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cerk | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00001723 | ||||||||
| WBStrain00031904 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP1358 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00007918 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00018674 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ceramide kinase activity. Predicted to be involved in ceramide metabolic process and phosphorylation. Human ortholog(s) of this gene implicated in retinitis pigmentosa 26. Is an ortholog of human CERK (ceramide kinase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110368 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21699) | ||||
| DOID:10584 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21699) | ||||||
| Molecular_info | Corresponding_CDS | T10B11.2 | |||||||
| Corresponding_transcript | T10B11.2.1 | ||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf034260 | ||||||||
| WBsf034281 | |||||||||
| WBsf643417 | |||||||||
| WBsf656459 | |||||||||
| WBsf984031 | |||||||||
| WBsf1010007 | |||||||||
| WBsf1010008 | |||||||||
| WBsf217925 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00090556 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052995 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004195 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000685 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035409 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116679 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram255 | ||||||||
| Expr6654 | |||||||||
| Expr1027867 | |||||||||
| Expr1038893 | |||||||||
| Expr1156598 | |||||||||
| Expr2009925 | |||||||||
| Expr2028165 | |||||||||
| Drives_construct | WBCnstr00002548 | ||||||||
| WBCnstr00025170 | |||||||||
| Construct_product | WBCnstr00025170 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (79) | |||||||||
| Interaction (33) | |||||||||
| Map_info | Map | I | Position | 1.54751 | |||||
| Positive | Positive_clone | T10B11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028527 | ||||||||
| WBPaper00032243 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00047500 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064789 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
