WormBase Tree Display for Gene: WBGene00020197
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| WBGene00020197 | SMap | S_parent | Sequence | T03G11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mans-3 | Paper_evidence | WBPaper00041024 | |||||
| Person_evidence | WBPerson2099 | ||||||||
| Sequence_name | T03G11.4 | ||||||||
| Molecular_name | T03G11.4 | ||||||||
| T03G11.4.1 | |||||||||
| CE29462 | |||||||||
| Other_name | CELE_T03G11.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | mans-3 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 11 May 2012 16:05:19 | WBPerson2970 | Name_change | CGC_name | mans-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mans | ||||||||
| Allele (50) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00008258 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008411 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013881 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008148 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008646 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013919 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | mans-3 is an ortholog of human MAN1B1 (mannosidase, alpha1B, member 1); mans-3 has a calcium ion dependent mannosyl-oligosaccharide 1,2-alpha-mannosidase activity ('ER-mannosidase'), based on enzymatic assay, with Man8GlcNAc2 (isomer B) as a final product. | Paper_evidence | WBPaper00041024 | |||||
| Person_evidence | WBPerson2099 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 10 Feb 2016 00:00:00 | ||||||||
| Automated_description | Predicted to enable mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Human ortholog(s) of this gene implicated in Rafiq syndrome. Is an ortholog of human MAN1B1 (mannosidase alpha class 1B member 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0081097 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6823) | ||||
| Molecular_info | Corresponding_CDS | T03G11.4 | |||||||
| Corresponding_transcript | T03G11.4.1 | ||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf648079 | ||||||||
| WBsf648080 | |||||||||
| WBsf1005190 | |||||||||
| WBsf235678 | |||||||||
| WBsf235679 | |||||||||
| WBsf235680 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018090 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00078164 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033496 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052304 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076638 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018091 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052305 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021217 | ||||||||
| Expr1038787 | |||||||||
| Expr1155940 | |||||||||
| Expr2013371 | |||||||||
| Expr2031603 | |||||||||
| Drives_construct | WBCnstr00025305 | ||||||||
| Construct_product | WBCnstr00025305 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (80) | |||||||||
| Interaction | WBInteraction000226781 | ||||||||
| WBInteraction000279187 | |||||||||
| WBInteraction000296522 | |||||||||
| WBInteraction000349661 | |||||||||
| WBInteraction000404106 | |||||||||
| WBInteraction000466500 | |||||||||
| WBInteraction000466501 | |||||||||
| WBInteraction000469189 | |||||||||
| WBInteraction000470607 | |||||||||
| Map_info | Map | X | Position | -6.11483 | |||||
| Positive | Positive_clone | T03G11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029024 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
