WormBase Tree Display for Gene: WBGene00020088
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| WBGene00020088 | SMap | S_parent | Sequence | R119 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | icpp-55 | Person_evidence | WBPerson564 | |||||
| WBPerson24683 | |||||||||
| WBPerson50 | |||||||||
| Sequence_name | R119.2 | ||||||||
| Molecular_name | R119.2a | ||||||||
| R119.2a.1 | |||||||||
| CE46866 | |||||||||
| R119.2b | |||||||||
| CE54597 | |||||||||
| R119.2b.1 | |||||||||
| Other_name | CELE_R119.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | icpp-55 | ||||||||
| DB_info | Database | AceView | gene | 1A840 | |||||
| WormQTL | gene | WBGene00020088 | |||||||
| WormFlux | gene | WBGene00020088 | |||||||
| NDB | locus_tag | CELE_R119.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020088|UniProtKB=O61710 | |||||||
| family | PTHR43226 | ||||||||
| NCBI | gene | 187899 | |||||||
| RefSeq | protein | NM_001425630.1 | |||||||
| NM_058324.5 | |||||||||
| TrEMBL | UniProtAcc | O61710 | |||||||
| UniProt_GCRP | UniProtAcc | O61710 | |||||||
| OMIM | gene | 613553 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | icpp-55 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | icpp | ||||||||
| Allele (123) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00036140 | ||||||||
| 00036141 | |||||||||
| 00036142 | |||||||||
| 00036143 | |||||||||
| 00036144 | |||||||||
| 00036145 | |||||||||
| 00124795 | |||||||||
| 00124796 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00019673 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000155 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003129 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003130 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009960 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012075 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021088 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021555 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable aminopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in nephronophthisis-like nephropathy 1. Is an ortholog of human XPNPEP3 (X-prolyl aminopeptidase 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111117 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:28052) | ||||
| Molecular_info | Corresponding_CDS | R119.2a | |||||||
| R119.2b | |||||||||
| Corresponding_CDS_history | R119.2:wp102 | ||||||||
| R119.2:wp229 | |||||||||
| Corresponding_transcript | R119.2a.1 | ||||||||
| R119.2b.1 | |||||||||
| Other_sequence (43) | |||||||||
| Associated_feature | WBsf982479 | ||||||||
| WBsf1009075 | |||||||||
| WBsf218898 | |||||||||
| WBsf218899 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00117086 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022540 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007259 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004071 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051750 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034842 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022300 | ||||||||
| Expr1038727 | |||||||||
| Expr1155415 | |||||||||
| Expr2005573 | |||||||||
| Expr2023791 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (60) | |||||||||
| Interaction (52) | |||||||||
| Map_info | Map | I | Position | -19.0587 | |||||
| Positive | Positive_clone | R119 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027453 | ||||||||
| WBPaper00028327 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
