WormBase Tree Display for Gene: WBGene00019941
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| WBGene00019941 | SMap | S_parent | Sequence | R07G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pgam-5 | Paper_evidence | WBPaper00034708 | |||||
| Sequence_name | R07G3.5 | ||||||||
| Molecular_name | R07G3.5 | ||||||||
| R07G3.5.1 | |||||||||
| CE31979 | |||||||||
| Other_name | CELE_R07G3.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | pgam-5 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Jul 2009 14:43:34 | WBPerson9133 | Name_change | CGC_name | pgam-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pgam | ||||||||
| Allele (15) | |||||||||
| Strain | WBStrain00051203 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | pgam-5 encodes a phosphoglycerate mutase that uses alternate catalytic activity as a protein serine/threonine phosphatase; PGAM-5 physically interacts with the SKN-1 transcription factor in a directed yeast two-hybrid assay as well as in vitro coimmunoprecipitation studies; based on sequence similarity, PGAM-5 is predicted to be a mitochondrial outer membrane protein. | Paper_evidence | WBPaper00042117 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 02 May 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in positive regulation of mitochondrial fission. Predicted to be located in mitochondrion. Expressed in neurons and pharynx. Is an ortholog of human PGAM5 (PGAM family member 5, mitochondrial serine/threonine protein phosphatase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R07G3.5 | |||||||
| Corresponding_CDS_history | R07G3.5:wp86 | ||||||||
| Corresponding_transcript | R07G3.5.1 | ||||||||
| Other_sequence (56) | |||||||||
| Associated_feature | WBsf655371 | ||||||||
| WBsf988496 | |||||||||
| WBsf223354 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062332 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017564 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034723 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051502 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10776 | ||||||||
| Expr1023845 | |||||||||
| Expr1038658 | |||||||||
| Expr1155180 | |||||||||
| Expr2014856 | |||||||||
| Expr2033091 | |||||||||
| Drives_construct | WBCnstr00017729 | ||||||||
| WBCnstr00025479 | |||||||||
| Construct_product | WBCnstr00025479 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | II | Position | 0.5049 | |||||
| Positive | Positive_clone | R07G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028498 | ||||||||
| WBPaper00034708 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042117 | |||||||||
| WBPaper00048667 | |||||||||
| WBPaper00050061 | |||||||||
| WBPaper00054980 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060984 | |||||||||
| WBPaper00064789 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200225 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (0.5048) | |||||||||
| Method | Gene |
