WormBase Tree Display for Gene: WBGene00019845
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| WBGene00019845 | SMap | S_parent | Sequence | R03G5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | irld-13 | Person_evidence | WBPerson260 | ||||||
| Sequence_name | R03G5.3 | |||||||||
| Molecular_name | R03G5.3 | |||||||||
| Other_name | CELE_R03G5.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | irld-13 | |||||||||
| DB_info | Database | AceView | gene | XI425 | ||||||
| WormQTL | gene | WBGene00019845 | ||||||||
| WormFlux | gene | WBGene00019845 | ||||||||
| NDB | locus_tag | CELE_R03G5.3 | ||||||||
| NCBI | gene | 187541 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 25 May 2012 15:57:08 | WBPerson2970 | Name_change | CGC_name | irld-13 | |||||
| 3 | 25 Jul 2019 14:31:09 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | irld | |||||||||
| Allele (96) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00141590 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00157036 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||||
| WBGene00191107 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||||
| WBGene00194476 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||||
| WBGene00149306 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||||
| WBGene00028747 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | |||||||
| WBGene00024416 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | |||||||
| Paralog (66) | ||||||||||
| Structured_description | Automated_description | Enriched in interfacial epithelial cell and neurons based on single-cell RNA-seq and RNA-seq studies. Is affected by several genes including daf-12; eat-2; and sir-2.1 based on tiling array; RNA-seq; and microarray studies. Is affected by four chemicals including Psoralens; allantoin; and Rifampin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | R03G5.3:wp101 | ||||||||
| R03G5.3:wp221 | ||||||||||
| R03G5.3:wp272 | ||||||||||
| Corresponding_pseudogene | R03G5.3 | |||||||||
| Associated_feature | WBsf663000 | |||||||||
| WBsf235977 | ||||||||||
| Experimental_info | Expr_pattern | Expr1011665 | ||||||||
| Expr1154895 | ||||||||||
| Expr2012828 | ||||||||||
| Expr2031065 | ||||||||||
| Drives_construct | WBCnstr00025551 | |||||||||
| Construct_product | WBCnstr00025551 | |||||||||
| Microarray_results (16) | ||||||||||
| Expression_cluster (40) | ||||||||||
| Interaction (24) | ||||||||||
| Map_info | Map | X | Position | -1.1866 | ||||||
| Positive | Positive_clone | R03G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00005154 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
