WormBase Tree Display for Gene: WBGene00019813

WBGene00019813 SMap: S_parent: Sequence: R01H2
  Identity: Version: 2
    Name: CGC_name: ger-1 Person_evidence: WBPerson2099
      Sequence_name: R01H2.5
      Molecular_name: R01H2.5
        R01H2.5.1
        CE00804
      Other_name: CELE_R01H2.5 Accession_evidence: NDB BX284603
      Public_name: ger-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 22 Mar 2006 10:02:58 WBPerson2970 Name_change: CGC_name: ger-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ger
    Allele (35)
    Strain: WBStrain00035248
      WBStrain00035249
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog: WBGene00069393 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00036425 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00163563 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00104955 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00119784 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00225430 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5492 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g8580 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g18201 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g20631 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6352 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20298 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7309 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3863 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7290 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g3016 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00658.g13223 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ger-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14407 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00009.g647 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12497 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009924 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07954 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8877 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30184010 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8060 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00208416 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00244818 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00260521 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290225 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301842 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0267823 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-041014-242 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040722-1 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-050417-317 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:12390 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:98857 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1307028 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog (13)
    Structured_description: Concise_description: ger-1 encodes the C. elegans ortholog of GDP-keto-6-deoxymannose 3,5-epimerase/4-reductase; GER-1 is involved in the synthesis of GDP-fucose and exhibits enzymatic activity in vitro; ger-1 is expressed in larvae and adults. Paper_evidence: WBPaper00027362
          Curator_confirmed: WBPerson1843
          Date_last_updated: 22 Dec 2009 00:00:00
      Automated_description: Enables GDP-L-fucose synthase activity. Involved in GDP-L-fucose biosynthetic process. Expressed in pharynx; seam cell; and spermatheca. Is an ortholog of human GFUS (GDP-L-fucose synthase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R01H2.5
    Corresponding_transcript: R01H2.5.1
    Other_sequence (81)
    Associated_feature: WBsf651162
      WBsf667039
      WBsf992935
      WBsf226894
  Experimental_info: RNAi_result: WBRNAi00088633 Inferred_automatically: RNAi_primary
      WBRNAi00096506 Inferred_automatically: RNAi_primary
      WBRNAi00096589 Inferred_automatically: RNAi_primary
      WBRNAi00017305 Inferred_automatically: RNAi_primary
      WBRNAi00096340 Inferred_automatically: RNAi_primary
      WBRNAi00034522 Inferred_automatically: RNAi_primary
      WBRNAi00005324 Inferred_automatically: RNAi_primary
      WBRNAi00088740 Inferred_automatically: RNAi_primary
      WBRNAi00096423 Inferred_automatically: RNAi_primary
      WBRNAi00051114 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram14
      Chronogram1469
      Expr4363
      Expr7625
      Expr1024686
      Expr1038581
      Expr1154819
      Expr2012021
      Expr2030257
    Drives_construct: WBCnstr00001052
      WBCnstr00001053
      WBCnstr00012770
      WBCnstr00025577
    Construct_product: WBCnstr00025577
    Microarray_results (20)
    Expression_cluster (106)
    Interaction (31)
  Map_info: Map: III Position: -0.802408 Error: 0.00106
    Positive: Positive_clone: R01H2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027362
    WBPaper00027766
    WBPaper00035585
    WBPaper00038491
    WBPaper00039133
    WBPaper00043274
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene