WormBase Tree Display for Gene: WBGene00019645
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WBGene00019645 | SMap | S_parent | Sequence | K11D12 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | swt-7 | Paper_evidence | WBPaper00037817 | |||
Person_evidence | WBPerson12258 | ||||||
Sequence_name | K11D12.5 | ||||||
Molecular_name | K11D12.5 | ||||||
K11D12.5.1 | |||||||
CE12134 | |||||||
Other_name | CELE_K11D12.5 | Accession_evidence | NDB | BX284605 | |||
Public_name | swt-7 | ||||||
DB_info | Database | AceView | gene | 5F508 | |||
WormQTL | gene | WBGene00019645 | |||||
WormFlux | gene | WBGene00019645 | |||||
NDB | locus_tag | CELE_K11D12.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00019645|UniProtKB=O44620 | |||||
family | PTHR10791 | ||||||
NCBI | gene | 178890 | |||||
RefSeq | protein | NM_071948.4 | |||||
TREEFAM | TREEFAM_ID | TF313635 | |||||
TrEMBL | UniProtAcc | O44620 | |||||
UniProt_GCRP | UniProtAcc | O44620 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | swt | ||||||
Allele (32) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (15) | |||||||
Ortholog (45) | |||||||
Paralog | WBGene00002295 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00007384 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00010594 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WBGene00011190 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00012647 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00016922 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00019300 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | swt-7 encodes a transmembrane protein that is a member of the SWEET1 family of sugar transporters. | Curator_confirmed | WBPerson1843 | |||
Date_last_updated | 03 Jun 2014 00:00:00 | ||||||
Automated_description | Predicted to enable sugar transmembrane transporter activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in Golgi membrane. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | K11D12.5 | |||||
Corresponding_transcript | K11D12.5.1 | ||||||
Other_sequence (62) | |||||||
Associated_feature | WBsf233632 | ||||||
Experimental_info | RNAi_result | WBRNAi00017009 | Inferred_automatically | RNAi_primary | |||
WBRNAi00034280 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00050590 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00065097 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1023688 | ||||||
Expr1038483 | |||||||
Expr1154297 | |||||||
Expr2017169 | |||||||
Expr2035305 | |||||||
Drives_construct | WBCnstr00025705 | ||||||
Construct_product | WBCnstr00025705 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (158) | |||||||
Interaction | WBInteraction000188156 | ||||||
WBInteraction000315247 | |||||||
WBInteraction000359514 | |||||||
WBInteraction000376566 | |||||||
WBInteraction000406393 | |||||||
WBInteraction000542656 | |||||||
Map_info | Map | V | Position | -3.5787 | Error | 0.002491 | |
Positive | Positive_clone | K11D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00028482 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |