WormBase Tree Display for Gene: WBGene00019546
expand all nodes | collapse all nodes | view schema
| WBGene00019546 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | glct-6 | Person_evidence | WBPerson1983 | |||||
| Sequence_name | W07G9.2 | ||||||||
| Molecular_name | W07G9.2a | ||||||||
| W07G9.2a.1 | |||||||||
| CE39798 | |||||||||
| W07G9.2b | |||||||||
| CE50307 | |||||||||
| W07G9.2c | |||||||||
| CE50304 | |||||||||
| W07G9.2b.1 | |||||||||
| W07G9.2c.1 | |||||||||
| Other_name | K09B3.2 | ||||||||
| W07G9.a | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_W07G9.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | glct-6 | ||||||||
| DB_info | Database | AceView | gene | 4E555 | |||||
| WormFlux | gene | WBGene00019546 | |||||||
| NDB | locus_tag | CELE_W07G9.2 | |||||||
| Panther | gene | CAEEL|WormBase=W07G9.2b|UniProtKB=A0A0K3AUF6 | |||||||
| family | PTHR10896 | ||||||||
| NCBI | gene | 4363062 | |||||||
| RefSeq | protein | NM_001380161.2 | |||||||
| NM_001313036.3 | |||||||||
| NM_001313035.3 | |||||||||
| KEGG | KEGG_id | 2.4.1.135 | |||||||
| NemaPath | KEGG_id | 2.4.1.135 | |||||||
| TrEMBL | UniProtAcc | A0A0K3ARJ9 | |||||||
| A0A0K3AUF6 | |||||||||
| G4SN66 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0K3AUF6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Sep 2008 13:35:32 | WBPerson2970 | Name_change | CGC_name | glct-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | glct | ||||||||
| Allele (147) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00008160 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| WBGene00008293 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00008479 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00011650 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00011781 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00005026 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity. Predicted to be involved in carbohydrate metabolic process and chondroitin sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Human ortholog(s) of this gene implicated in Barrett's esophagus and schizophrenia. Is an ortholog of human B3GAT1 (beta-1,3-glucuronyltransferase 1) and B3GAT2 (beta-1,3-glucuronyltransferase 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9206 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:922) | ||||
| DOID:5419 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:922) | ||||||
| Molecular_info | Corresponding_CDS | W07G9.2a | |||||||
| W07G9.2b | |||||||||
| W07G9.2c | |||||||||
| Corresponding_CDS_history | K09B3.2:wp154 | ||||||||
| Corresponding_transcript | W07G9.2a.1 | ||||||||
| W07G9.2b.1 | |||||||||
| W07G9.2c.1 | |||||||||
| Other_sequence | Acan_isotig04721 | ||||||||
| ACC38686_1 | |||||||||
| EY460287.1 | |||||||||
| BU665944.1 | |||||||||
| AS13682 | |||||||||
| CJC00145_1 | |||||||||
| ACC32967_1 | |||||||||
| Acan_isotig04720 | |||||||||
| NAC00723_1 | |||||||||
| EY461809.1 | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00103571 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00078601 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034186 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019710 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016876 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050378 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115913 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078668 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016151 | ||||||||
| Expr1038448 | |||||||||
| Expr1158502 | |||||||||
| Expr2012085 | |||||||||
| Expr2030321 | |||||||||
| Drives_construct | WBCnstr00025774 | ||||||||
| Construct_product | WBCnstr00025774 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction | WBInteraction000274526 | ||||||||
| WBInteraction000379723 | |||||||||
| WBInteraction000389797 | |||||||||
| Map_info | Map | IV | Position | -2.25846 | Error | 0.014484 | |||
| Positive | Positive_clone | W07G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065080 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | K09B3.2 renamed W07G9.2 | Curator_confirmed | WBPerson1867 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
