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WormBase Tree Display for Gene: WBGene00019380

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Name Class

WBGene00019380SMapS_parentSequenceK04C2
IdentityVersion1
NameSequence_nameK04C2.2
Molecular_nameK04C2.2
K04C2.2.1
CE00722
Other_nameK04C2.aCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_K04C2.2Accession_evidenceNDBBX284603
Public_nameK04C2.2
DB_infoDatabaseAceViewgene3H983
WormQTLgeneWBGene00019380
WormFluxgeneWBGene00019380
NDBlocus_tagCELE_K04C2.2
PanthergeneCAEEL|WormBase=WBGene00019380|UniProtKB=Q21210
familyPTHR13213
NCBIgene175960
RefSeqproteinNM_066098.7
TREEFAMTREEFAM_IDTF317401
TrEMBLUniProtAccQ21210
UniProt_GCRPUniProtAccQ21210
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:01WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (82)
RNASeq_FPKM (74)
GO_annotation00070677
00070678
00070679
00070680
00124245
00124246
00124247
00124248
Ortholog (21)
Structured_descriptionAutomated_descriptionPredicted to enable sequence-specific DNA binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in nucleolus. Is an ortholog of human MYBBP1A (MYB binding protein 1a).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK04C2.2
Corresponding_transcriptK04C2.2.1
Other_sequenceCR06000
CJC16984_1
CSC02344_1
FD514667.1
CJC10952_1
CRC03750_1
CBC10076_1
CBC16988_1
Associated_featureWBsf645299
WBsf225165
WBsf225166
Experimental_infoRNAi_result (11)
Expr_patternExpr1022338
Expr1038370
Expr1153593
Expr2004759
Expr2022983
Drives_constructWBCnstr00025877
Construct_productWBCnstr00025877
Microarray_results (21)
Expression_clusterWBPaper00028451:Abundant_spermatogenesis_enriched
WBPaper00031040:TGF-beta_adult_downregulated
WBPaper00040135:heat-shock_upregulated
WBPaper00044128:DietaryRestriction_upregulated
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044746:aging_downregulated_HeatShock
WBPaper00044760:germline_specific
WBPaper00045420:fertilization_upregulated_protein
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00047131:daf-2(e1370)_downregulated_N2-background
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_8
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049954:BPS_downregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050698:DEP-1_interacting
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:GABAergic-neuron_enriched
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:nucleus_specific
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053599:mitosis_vs_meiosis_upregulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:clk-1(qm30)_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055648:germline_expressed
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056034:pals-25(jy9)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_downregulated_protein
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00059027:neuron-synapses_enriched
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059598:HeatShock_downregulated
WBPaper00059605:MUT-16_interacting
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060661:sensory-neuron_depleted
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:atad-3-mpst-1
WBPaper00061527:tomm-40_3370-eif-3.C_3529
WBPaper00062325:etr-1(lq61)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064315:mes-4(bn73)_downregulated_EGCs
WBPaper00065258:anchor-cell_depleted
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065993:glp-1(e2141)_downregulated
cgc4489_group_2
cgc4489_group_9
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
WBPaper00025032:cluster_2
WBPaper00025032:cluster_12
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026952:class_E
WBPaper00031003:hlh_1_enriched
WBPaper00032165:A_to_C_transit_decreased
WBPaper00032948:FedUp
WBPaper00034739:N2moreDR1350
WBPaper00035560:ahr-1_downregulated
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_E
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041002:HF_11d_2.0mM_Up
WBPaper00041207:CE_dauer_down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042128:gei-8(ok1671)_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00053236:daf-16(mgDF50)_regulated_Starved
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:cluster_2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(66_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_C
[cgc6390]:intrinsic
Interaction (70)
Map_infoPositivePositive_cloneK04C2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-0.907512
ReferenceWBPaper00024200
WBPaper00028451
WBPaper00038491
WBPaper00040135
WBPaper00061547
MethodGene