WormBase Tree Display for Gene: WBGene00019272
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| WBGene00019272 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | H42K12.3 | |||||||
| Molecular_name | H42K12.3 | ||||||||
| H42K12.3.1 | |||||||||
| CE11614 | |||||||||
| H42K12.3.2 | |||||||||
| H42K12.3.3 | |||||||||
| Other_name | CELE_H42K12.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | H42K12.3 | ||||||||
| DB_info | Database | AceView | gene | XB933 | |||||
| WormQTL | gene | WBGene00019272 | |||||||
| WormFlux | gene | WBGene00019272 | |||||||
| NDB | locus_tag | CELE_H42K12.3 | |||||||
| NCBI | gene | 180474 | |||||||
| RefSeq | protein | NM_075839.9 | |||||||
| TREEFAM | TREEFAM_ID | TF326431 | |||||||
| TrEMBL | UniProtAcc | O17347 | |||||||
| UniProt_GCRP | UniProtAcc | O17347 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (81) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (30) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Automated_description | Enriched in hypodermis; sensory neurons; and ventral cord blast cell based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-nine chemicals including hydrogen sulfide; methylmercury hydroxide; and 1-methylnicotinamide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Thrombospondin type-1 (TSP1) repeat superfamily; PAN domain; and PAN/Apple domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H42K12.3 | |||||||
| Corresponding_transcript | H42K12.3.1 | ||||||||
| H42K12.3.2 | |||||||||
| H42K12.3.3 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf647822 | ||||||||
| WBsf647823 | |||||||||
| WBsf647824 | |||||||||
| WBsf662468 | |||||||||
| WBsf718503 | |||||||||
| WBsf1004010 | |||||||||
| WBsf1022252 | |||||||||
| WBsf235325 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00016354 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049560 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018033 | ||||||||
| Expr1038325 | |||||||||
| Expr1153287 | |||||||||
| Expr2004618 | |||||||||
| Expr2022844 | |||||||||
| Drives_construct | WBCnstr00025952 | ||||||||
| Construct_product | WBCnstr00025952 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (300) | |||||||||
| Interaction (147) | |||||||||
| Map_info | Positive | Positive_clone | H42K12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -18.4159 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
