WormBase Tree Display for Gene: WBGene00019220
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| WBGene00019220 | SMap | S_parent | Sequence | H20J04 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | pfd-2 | Person_evidence | WBPerson3663 | |||||
| WBPerson2136 | |||||||||
| Sequence_name | H20J04.5 | ||||||||
| Molecular_name | H20J04.5 | ||||||||
| H20J04.5.1 | |||||||||
| CE23815 | |||||||||
| Other_name | tag-355 | ||||||||
| CELE_H20J04.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | pfd-2 | ||||||||
| DB_info | Database | AceView | gene | 2E617 | |||||
| WormQTL | gene | WBGene00019220 | |||||||
| WormFlux | gene | WBGene00019220 | |||||||
| NDB | locus_tag | CELE_H20J04.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019220|UniProtKB=Q9N5M2 | |||||||
| family | PTHR13303 | ||||||||
| NCBI | gene | 173768 | |||||||
| RefSeq | protein | NM_062363.8 | |||||||
| SwissProt | UniProtAcc | Q9N5M2 | |||||||
| TREEFAM | TREEFAM_ID | TF313252 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N5M2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Jun 2005 09:45:25 | WBPerson2970 | Name_change | CGC_name | tag-355 | ||||
| 3 | 02 Aug 2006 11:39:27 | WBPerson2970 | Name_change | CGC_name | pfd-2 | ||||
| Other_name | tag-355 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pfd | ||||||||
| Allele (26) | |||||||||
| Strain | WBStrain00055411 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095519 | ||||||||
| 00095520 | |||||||||
| 00095521 | |||||||||
| 00095522 | |||||||||
| 00095523 | |||||||||
| 00095524 | |||||||||
| 00124114 | |||||||||
| 00124115 | |||||||||
| 00124116 | |||||||||
| Contained_in_operon | CEOP2124 | ||||||||
| Ortholog (31) | |||||||||
| Structured_description | Concise_description | pfd-2 encodes a putative prefoldin subunit 2, orthologous to human PFDN2, that is required for normal microtubule growth; pfd-2(RNAi) animals have sterile progeny, and pfd-2(RNAi) embryos show a reduced microtubule growth rate; in mass RNAi assays, PFD-2 is required for normal pronuclear migration, embryonic and larval viability, body shape, and locomotion. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006060 | |||||||||
| WBPaper00006395 | |||||||||
| WBPaper00024497 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00031309 | |||||||||
| WBPaper00031362 | |||||||||
| WBPaper00031363 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein folding chaperone. Predicted to be involved in protein folding. Located in endoplasmic reticulum; sarcomere; and striated muscle dense body. Is an ortholog of human PFDN2 (prefoldin subunit 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H20J04.5 | |||||||
| Corresponding_transcript | H20J04.5.1 | ||||||||
| Other_sequence (26) | |||||||||
| Associated_feature | WBsf987575 | ||||||||
| WBsf987576 | |||||||||
| WBsf987577 | |||||||||
| WBsf1012073 | |||||||||
| WBsf1012074 | |||||||||
| WBsf221111 | |||||||||
| WBsf221112 | |||||||||
| Experimental_info | RNAi_result (21) | ||||||||
| Expr_pattern | Expr9429 | ||||||||
| Expr1018343 | |||||||||
| Expr1038301 | |||||||||
| Expr1153172 | |||||||||
| Expr2014842 | |||||||||
| Expr2033077 | |||||||||
| Construct_product | WBCnstr00013994 | ||||||||
| WBCnstr00016241 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (102) | |||||||||
| SAGE_tag | SAGE:ttttcatacgttttttc | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttttcatacg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaaaagcagt | Strand | Antisense | |||||||
| SAGE:aaaaagcagtaggaaat | Strand | Antisense | |||||||
| Interaction (90) | |||||||||
| Map_info | Map | II | Position | -4.8505 | Error | 0.009757 | |||
| Positive | Positive_clone | H20J04 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5292 | |||||||
| 4473 | |||||||||
| 5349 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031309 | ||||||||
| WBPaper00031320 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
