WormBase Tree Display for Gene: WBGene00019220

WBGene00019220 SMap: S_parent: Sequence: H20J04
  Identity: Version: 3
    Name: CGC_name: pfd-2 Person_evidence: WBPerson3663
            WBPerson2136
      Sequence_name: H20J04.5
      Molecular_name: H20J04.5
        H20J04.5.1
        CE23815
      Other_name: tag-355
        CELE_H20J04.5 Accession_evidence: NDB BX284602
      Public_name: pfd-2
    DB_info: Database: AceView gene 2E617
        WormQTL gene WBGene00019220
        WormFlux gene WBGene00019220
        NDB locus_tag CELE_H20J04.5
        Panther gene CAEEL|WormBase=WBGene00019220|UniProtKB=Q9N5M2
          family PTHR13303
        NCBI gene 173768
        RefSeq protein NM_062363.8
        SwissProt UniProtAcc Q9N5M2
        TREEFAM TREEFAM_ID TF313252
        UniProt_GCRP UniProtAcc Q9N5M2
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 21 Jun 2005 09:45:25 WBPerson2970 Name_change: CGC_name: tag-355
        3 02 Aug 2006 11:39:27 WBPerson2970 Name_change: CGC_name: pfd-2
                Other_name: tag-355
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pfd
    Allele (26)
    Strain: WBStrain00055411
    RNASeq_FPKM (74)
    GO_annotation: 00095519
      00095520
      00095521
      00095522
      00095523
      00095524
      00124114
      00124115
      00124116
    Contained_in_operon: CEOP2124
    Ortholog (31)
    Structured_description: Concise_description: pfd-2 encodes a putative prefoldin subunit 2, orthologous to human PFDN2, that is required for normal microtubule growth; pfd-2(RNAi) animals have sterile progeny, and pfd-2(RNAi) embryos show a reduced microtubule growth rate; in mass RNAi assays, PFD-2 is required for normal pronuclear migration, embryonic and larval viability, body shape, and locomotion. Paper_evidence: WBPaper00004651
            WBPaper00005654
            WBPaper00006060
            WBPaper00006395
            WBPaper00024497
            WBPaper00025054
            WBPaper00031309
            WBPaper00031362
            WBPaper00031363
          Curator_confirmed: WBPerson567
          Date_last_updated: 14 Jan 2008 00:00:00
      Automated_description: Predicted to enable protein folding chaperone. Predicted to be involved in protein folding. Located in endoplasmic reticulum; sarcomere; and striated muscle dense body. Is an ortholog of human PFDN2 (prefoldin subunit 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: H20J04.5
    Corresponding_transcript: H20J04.5.1
    Other_sequence (26)
    Associated_feature: WBsf987575
      WBsf987576
      WBsf987577
      WBsf1012073
      WBsf1012074
      WBsf221111
      WBsf221112
  Experimental_info: RNAi_result (21)
    Expr_pattern: Expr9429
      Expr1018343
      Expr1038301
      Expr1153172
      Expr2014842
      Expr2033077
    Construct_product: WBCnstr00013994
      WBCnstr00016241
    Microarray_results (18)
    Expression_cluster (102)
    SAGE_tag: SAGE:ttttcatacgttttttc Strand: Sense
        Unambiguously_mapped
      SAGE:ttttcatacg Strand: Sense
        Unambiguously_mapped
      SAGE:aaaaagcagt Strand: Antisense
      SAGE:aaaaagcagtaggaaat Strand: Antisense
    Interaction: WBInteraction000009558
      WBInteraction000028420
      WBInteraction000029111
      WBInteraction000031015
      WBInteraction000034832
      WBInteraction000038119
      WBInteraction000041278
      WBInteraction000041599
      WBInteraction000042657
      WBInteraction000043311
      WBInteraction000045352
      WBInteraction000046354
      WBInteraction000046762
      WBInteraction000048535
      WBInteraction000048701
      WBInteraction000049075
      WBInteraction000050062
      WBInteraction000114340
      WBInteraction000114341
      WBInteraction000120205
      WBInteraction000120206
      WBInteraction000121172
      WBInteraction000159461
      WBInteraction000159462
      WBInteraction000159463
      WBInteraction000159464
      WBInteraction000169163
      WBInteraction000169234
      WBInteraction000169413
      WBInteraction000170091
      WBInteraction000170092
      WBInteraction000172164
      WBInteraction000246407
      WBInteraction000250809
      WBInteraction000275532
      WBInteraction000335046
      WBInteraction000361424
      WBInteraction000362512
      WBInteraction000374356
      WBInteraction000384282
      WBInteraction000395082
      WBInteraction000401639
      WBInteraction000401640
      WBInteraction000401703
      WBInteraction000440601
      WBInteraction000450609
      WBInteraction000459638
      WBInteraction000463326
      WBInteraction000464055
      WBInteraction000464141
      WBInteraction000465836
      WBInteraction000465837
      WBInteraction000465838
      WBInteraction000465839
      WBInteraction000465840
      WBInteraction000467707
      WBInteraction000467708
      WBInteraction000467709
      WBInteraction000468862
      WBInteraction000468863
      WBInteraction000469345
      WBInteraction000470985
      WBInteraction000471389
      WBInteraction000471420
      WBInteraction000472200
      WBInteraction000472219
      WBInteraction000472523
      WBInteraction000472871
      WBInteraction000473835
      WBInteraction000473846
      WBInteraction000474149
      WBInteraction000474679
      WBInteraction000475160
      WBInteraction000475406
      WBInteraction000511856
      WBInteraction000511868
      WBInteraction000511869
      WBInteraction000511870
      WBInteraction000511871
      WBInteraction000512882
      WBInteraction000514119
      WBInteraction000515155
      WBInteraction000547285
      WBInteraction000550279
      WBInteraction000553856
      WBInteraction000554084
      WBInteraction000561466
      WBInteraction000577035
      WBInteraction000578118
      WBInteraction000581090
  Map_info: Map: II Position: -4.8505 Error: 0.009757
    Positive: Positive_clone: H20J04 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5292
        4473
        5349
    Pseudo_map_position
  Reference: WBPaper00031309
    WBPaper00031320
    WBPaper00038444
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene