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WormBase Tree Display for Gene: WBGene00019058

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Name Class

WBGene00019058SMapS_parentSequenceF58F9
IdentityVersion1
NameSequence_nameF58F9.4
Molecular_nameF58F9.4
F58F9.4.1
CE49259
Other_nameCELE_F58F9.4Accession_evidenceNDBBX284604
Public_nameF58F9.4
DB_infoDatabaseAceViewgene4G995
WormQTLgeneWBGene00019058
WormFluxgeneWBGene00019058
NDBlocus_tagCELE_F58F9.4
PanthergeneCAEEL|WormBase=WBGene00019058|UniProtKB=Q20988
familyPTHR21516
NCBIgene186536
RefSeqproteinNM_068538.3
TREEFAMTREEFAM_IDTF318575
TrEMBLUniProtAccQ20988
UniProt_GCRPUniProtAccQ20988
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:01WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (80)
RNASeq_FPKM (74)
Ortholog (26)
Paralog (30)
Structured_descriptionAutomated_descriptionEnriched in CEM; HOB; IL2 neuron; intestine; and ray neuron type B based on tiling array and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including 4-bromodiphenyl ether; Rifampin; and Sirolimus based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF272) and Protein of unknown function DUF272.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF58F9.4
Corresponding_CDS_historyF58F9.4:wp240
Corresponding_transcriptF58F9.4.1
Associated_featureWBsf228389
Experimental_infoRNAi_resultWBRNAi00049029Inferred_automaticallyRNAi_primary
WBRNAi00016000Inferred_automaticallyRNAi_primary
WBRNAi00033118Inferred_automaticallyRNAi_primary
Expr_patternExpr1014834
Expr1152769
Expr2004409
Expr2022633
Drives_constructWBCnstr00026095
Construct_productWBCnstr00026095
Microarray_results (18)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_downregulated
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00049001:EVN_enriched
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049635:dop-1(vs100)_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050504:hrp-2(RNAi)_upregulated
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00051021:4-bromodiphenyl-ether_downregulated
WBPaper00051039:intestine_enriched
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056284:ints-6(t1903)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056617:adr-1_upregulated_embryo_transcript
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00057347:nhr-14(tm1473)_upreglated
WBPaper00058711:paraquat_downregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059253:sucrose_stearic-acid_upregulated
WBPaper00059537:ngn-1(ok2200)_upregulated
WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059987:Wounding_downregulated
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060661:sensory-neuron_depleted
WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061319:pnp-1(jy90)_upregulated
WBPaper00061319:pnp-1(jy121)_upregulated
WBPaper00061527:ifd-1-ifp-1
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064632:daf-2(e1370)_downregulated_intestine
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00033099:organophosphorus_pesticide_regulated
WBPaper00034739:N2lessDR1350
WBPaper00035227:heat_shock_regulated
WBPaper00036123:Fluoranthene_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_C
WBPaper00037695:WC_5-day
WBPaper00040184:hcf-1down_sir-2.1down_daf-2nc
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00055435:AuNPs_upregulated
[cgc6390]:Cluster_C
[cgc6390]:herm_soma-enriched
Interaction (31)
Map_infoPositivePositive_cloneF58F9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV3.10606
ReferenceWBPaper00033099
MethodGene