WormBase Tree Display for Gene: WBGene00019008
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| WBGene00019008 | SMap | S_parent | Sequence | F57C9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pdxk-1 | Person_evidence | WBPerson24179 | |||||
| Sequence_name | F57C9.1 | ||||||||
| Molecular_name | F57C9.1a | ||||||||
| F57C9.1a.1 | |||||||||
| CE46957 | |||||||||
| F57C9.1b | |||||||||
| CE44115 | |||||||||
| F57C9.1c | |||||||||
| CE47070 | |||||||||
| F57C9.1b.1 | |||||||||
| F57C9.1c.1 | |||||||||
| Other_name | CELE_F57C9.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | pdxk-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Sep 2016 15:57:39 | WBPerson2970 | Name_change | CGC_name | pdxk-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pdxk | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00051223 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP1204 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable pyridoxal kinase activity. Predicted to be involved in pyridoxal 5'-phosphate salvage. Predicted to be located in cytosol. Is an ortholog of human PDXK (pyridoxal kinase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57C9.1a | |||||||
| F57C9.1b | |||||||||
| F57C9.1c | |||||||||
| Corresponding_CDS_history | F57C9.1a:wp229 | ||||||||
| F57C9.1b:wp205 | |||||||||
| Corresponding_transcript | F57C9.1a.1 | ||||||||
| F57C9.1b.1 | |||||||||
| F57C9.1c.1 | |||||||||
| Other_sequence (41) | |||||||||
| Associated_feature | WBsf656261 | ||||||||
| WBsf217585 | |||||||||
| WBsf217586 | |||||||||
| WBsf217587 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048864 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033034 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003845 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021065 | ||||||||
| Expr1038209 | |||||||||
| Expr1152612 | |||||||||
| Expr2014814 | |||||||||
| Expr2033048 | |||||||||
| Drives_construct | WBCnstr00026128 | ||||||||
| Construct_product | WBCnstr00026128 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (98) | |||||||||
| SAGE_tag | SAGE:ggtataattg | Strand | Antisense | ||||||
| SAGE:tgctcactggatactgc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gatttgaagt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:agaaaattttcacggaa | Strand | Antisense | |||||||
| SAGE:gacaacgtga | Strand | Antisense | |||||||
| SAGE:tgctcactgg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (21) | |||||||||
| Map_info | Map | I | Position | -0.704275 | |||||
| Positive | Positive_clone | F57C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00052569 | |||||||||
| WBPaper00053600 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058323 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
