WormBase Tree Display for Gene: WBGene00019008
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WBGene00019008 | SMap | S_parent | Sequence | F57C9 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | pdxk | |||||
Allele (24) | ||||||
Strain | WBStrain00051223 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation (14) | ||||||
Contained_in_operon | CEOP1204 | |||||
Ortholog (38) | ||||||
Structured_description | Automated_description | Predicted to enable pyridoxal kinase activity. Predicted to be involved in pyridoxal 5'-phosphate salvage. Predicted to be located in cytosol. Is an ortholog of human PDXK (pyridoxal kinase). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | F57C9.1a | ||||
F57C9.1b | ||||||
F57C9.1c | ||||||
Corresponding_CDS_history | F57C9.1a:wp229 | |||||
F57C9.1b:wp205 | ||||||
Corresponding_transcript | F57C9.1a.1 | |||||
F57C9.1b.1 | ||||||
F57C9.1c.1 | ||||||
Other_sequence (41) | ||||||
Associated_feature | WBsf656261 | |||||
WBsf217585 | ||||||
WBsf217586 | ||||||
WBsf217587 | ||||||
Experimental_info | RNAi_result | WBRNAi00048864 | Inferred_automatically | RNAi_primary | ||
WBRNAi00033034 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00003845 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1021065 | |||||
Expr1038209 | ||||||
Expr1152612 | ||||||
Expr2014814 | ||||||
Expr2033048 | ||||||
Drives_construct | WBCnstr00026128 | |||||
Construct_product | WBCnstr00026128 | |||||
Microarray_results (29) | ||||||
Expression_cluster (98) | ||||||
SAGE_tag | SAGE:ggtataattg | Strand | Antisense | |||
SAGE:tgctcactggatactgc | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:gatttgaagt | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:agaaaattttcacggaa | Strand | Antisense | ||||
SAGE:gacaacgtga | Strand | Antisense | ||||
SAGE:tgctcactgg | Strand | Sense | ||||
Unambiguously_mapped | ||||||
Interaction (21) | ||||||
Map_info | Map | I | Position | -0.704275 | ||
Positive | Positive_clone | F57C9 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00038491 | |||||
WBPaper00052569 | ||||||
WBPaper00053600 | ||||||
WBPaper00055090 | ||||||
WBPaper00058323 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |