WormBase Tree Display for Gene: WBGene00018954
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| WBGene00018954 | SMap | S_parent | Sequence | F56C9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lab-2 | Person_evidence | WBPerson26504 | |||||
| Sequence_name | F56C9.11 | ||||||||
| Molecular_name | F56C9.11 | ||||||||
| F56C9.11.1 | |||||||||
| CE31004 | |||||||||
| Other_name | F56C9.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F56C9.11 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | lab-2 | ||||||||
| DB_info | Database | AceView | gene | 3I416 | |||||
| WormQTL | gene | WBGene00018954 | |||||||
| WormFlux | gene | WBGene00018954 | |||||||
| NDB | locus_tag | CELE_F56C9.11 | |||||||
| NCBI | gene | 176039 | |||||||
| RefSeq | protein | NM_171189.8 | |||||||
| TREEFAM | TREEFAM_ID | TF327237 | |||||||
| TrEMBL | UniProtAcc | Q8WQE8 | |||||||
| UniProt_GCRP | UniProtAcc | Q8WQE8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 02 Mar 2020 15:16:17 | WBPerson1983 | Name_change | CGC_name | lab-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lab | ||||||||
| Allele (82) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP3425 | ||||||||
| Ortholog (16) | |||||||||
| Structured_description | Automated_description | Enriched in MSpaaaaa; germ line; rectal epithelial cell; rectum; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including eat-2; sir-2.1; and npr-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including rotenone; stavudine; and Zidovudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56C9.11 | |||||||
| Corresponding_transcript | F56C9.11.1 | ||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00005878 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00068162 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015806 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048669 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048670 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067546 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013100 | ||||||||
| Expr1038177 | |||||||||
| Expr1152433 | |||||||||
| Expr2004285 | |||||||||
| Expr2022509 | |||||||||
| Drives_construct | WBCnstr00026166 | ||||||||
| Construct_product | WBCnstr00026166 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (97) | |||||||||
| Interaction | WBInteraction000007000 | ||||||||
| WBInteraction000007616 | |||||||||
| WBInteraction000556148 | |||||||||
| Map_info | Map | III | Position | -0.752615 | |||||
| Positive | Positive_clone | F56C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00066214 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
