WormBase Tree Display for Gene: WBGene00018954
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WBGene00018954 | SMap | S_parent | Sequence | F56C9 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lab-2 | Person_evidence | WBPerson26504 | |||
Sequence_name | F56C9.11 | ||||||
Molecular_name | F56C9.11 | ||||||
F56C9.11.1 | |||||||
CE31004 | |||||||
Other_name | F56C9.b | Curator_confirmed | WBPerson1983 | ||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
CELE_F56C9.11 | Accession_evidence | NDB | BX284603 | ||||
Public_name | lab-2 | ||||||
DB_info | Database | AceView | gene | 3I416 | |||
WormQTL | gene | WBGene00018954 | |||||
WormFlux | gene | WBGene00018954 | |||||
NDB | locus_tag | CELE_F56C9.11 | |||||
NCBI | gene | 176039 | |||||
RefSeq | protein | NM_171189.8 | |||||
TREEFAM | TREEFAM_ID | TF327237 | |||||
TrEMBL | UniProtAcc | Q8WQE8 | |||||
UniProt_GCRP | UniProtAcc | Q8WQE8 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lab | ||||||
Allele (82) | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP3425 | ||||||
Ortholog (16) | |||||||
Structured_description | Automated_description | Enriched in MSpaaaaa; germ line; rectal epithelial cell; rectum; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including eat-2; sir-2.1; and npr-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including rotenone; stavudine; and Zidovudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F56C9.11 | |||||
Corresponding_transcript | F56C9.11.1 | ||||||
Associated_feature (12) | |||||||
Experimental_info | RNAi_result | WBRNAi00005878 | Inferred_automatically | RNAi_primary | |||
WBRNAi00068162 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015806 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00048669 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00048670 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067546 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1013100 | ||||||
Expr1038177 | |||||||
Expr1152433 | |||||||
Expr2004285 | |||||||
Expr2022509 | |||||||
Drives_construct | WBCnstr00026166 | ||||||
Construct_product | WBCnstr00026166 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (97) | |||||||
Interaction | WBInteraction000007000 | ||||||
WBInteraction000007616 | |||||||
WBInteraction000556148 | |||||||
Map_info | Map | III | Position | -0.752615 | |||
Positive | Positive_clone | F56C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00066214 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |