WormBase Tree Display for Gene: WBGene00018943
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| WBGene00018943 | SMap | S_parent | Sequence | F56C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dgn-2 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F56C3.6 | ||||||||
| Molecular_name | F56C3.6 | ||||||||
| F56C3.6.1 | |||||||||
| CE17897 | |||||||||
| Other_name | CELE_F56C3.6 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | dgn-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Feb 2005 16:32:53 | WBPerson2970 | Name_change | CGC_name | dgn-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dgn | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00005033 | ||||||||
| WBStrain00005039 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00036244 | ||||||||
| 00036245 | |||||||||
| 00036246 | |||||||||
| 00036247 | |||||||||
| 00036248 | |||||||||
| 00036249 | |||||||||
| 00036250 | |||||||||
| 00123910 | |||||||||
| Ortholog (16) | |||||||||
| Paralog | WBGene00017221 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00000961 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable laminin binding activity. Predicted to be involved in axon guidance; morphogenesis of an epithelium; and nerve development. Predicted to be located in sarcolemma. Predicted to be part of dystroglycan complex. Human ortholog(s) of this gene implicated in Duchenne muscular dystrophy; Fukuyama congenital muscular dystrophy; autosomal recessive limb-girdle muscular dystrophy type 2D; autosomal recessive limb-girdle muscular dystrophy type 2P; bronchopulmonary dysplasia; congenital muscular dystrophy-dystroglycanopathy type A9; and inclusion body myositis. Is an ortholog of human DAG1 (dystroglycan 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110278 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||
| DOID:0050559 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||||
| DOID:11723 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||||
| DOID:3429 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||||
| DOID:0110293 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||||
| DOID:11650 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||||
| DOID:0111232 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||||
| Molecular_info | Corresponding_CDS | F56C3.6 | |||||||
| Corresponding_transcript | F56C3.6.1 | ||||||||
| Associated_feature | WBsf670110 | ||||||||
| WBsf1004022 | |||||||||
| WBsf1004023 | |||||||||
| WBsf1022260 | |||||||||
| WBsf1022261 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048661 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032940 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093028 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026871 | ||||||||
| Expr1152423 | |||||||||
| Expr2029107 | |||||||||
| Drives_construct | WBCnstr00026176 | ||||||||
| Construct_product | WBCnstr00026176 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (63) | |||||||||
| Interaction | WBInteraction000203122 | ||||||||
| WBInteraction000217819 | |||||||||
| WBInteraction000306215 | |||||||||
| WBInteraction000377236 | |||||||||
| WBInteraction000396771 | |||||||||
| Map_info | Map | X | Position | -18.2125 | Error | 0.051862 | |||
| Positive | Positive_clone | F56C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5069 | |||||||
| 4744 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027231 | ||||||||
| WBPaper00027321 | |||||||||
| WBPaper00032446 | |||||||||
| WBPaper00040382 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
