WormBase Tree Display for Gene: WBGene00018900
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| WBGene00018900 | Evidence | Person_evidence | WBPerson2829 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F55G1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rod-1 | Person_evidence | WBPerson1816 | |||||
| WBPerson1836 | |||||||||
| Sequence_name | F55G1.4 | ||||||||
| Molecular_name | F55G1.4 | ||||||||
| F55G1.4.1 | |||||||||
| CE07281 | |||||||||
| Other_name | CELE_F55G1.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rod-1 | ||||||||
| DB_info | Database | AceView | gene | 4I249 | |||||
| WormQTL | gene | WBGene00018900 | |||||||
| WormFlux | gene | WBGene00018900 | |||||||
| NDB | locus_tag | CELE_F55G1.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018900|UniProtKB=Q20849 | |||||||
| family | PTHR15688 | ||||||||
| NCBI | gene | 177520 | |||||||
| RefSeq | protein | NM_068799.8 | |||||||
| SwissProt | UniProtAcc | Q20849 | |||||||
| TREEFAM | TREEFAM_ID | TF101176 | |||||||
| UniProt_GCRP | UniProtAcc | Q20849 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rod | ||||||||
| Allele (86) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (29) | |||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | rod-1 encodes a novel protein that is orthologous to the Drosophila Rough Deal and mammalian KNTC1 kinetochore components; in C. elegans, ROD-1 functions as part of the RZZ (Rod/Zw10/Zwilch) complex that regulates microtubule attachment to the kinetochores; ROD-1 physically interacts with, and negatively regulates activity of, NDC-80, a member of the NDC80 complex that mediates end-coupled microtubule attchament to kinetochores, thus ensuring correct temporal regulation of the transition from dynein-mediated, lateral microtuble attachments to NDC-80-mediated end-coupled attachments. | Paper_evidence | WBPaper00032153 | |||||
| WBPaper00044471 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 Nov 2013 00:00:00 | ||||||||
| Automated_description | Enables protein domain specific binding activity. Involved in several processes, including chromosome organization; positive regulation of kinetochore assembly; and regulation of cell cycle process. Part of RZZ complex. Is an ortholog of human KNTC1 (kinetochore associated 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F55G1.4 | |||||||
| Corresponding_transcript | F55G1.4.1 | ||||||||
| Other_sequence | CBC03914_1 | ||||||||
| CBC12160_1 | |||||||||
| CJC11400_1 | |||||||||
| Associated_feature | WBsf646081 | ||||||||
| WBsf660298 | |||||||||
| WBsf228536 | |||||||||
| WBsf228537 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00084112 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00084070 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084063 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048542 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084099 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002411 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084106 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14570 | ||||||||
| Expr14571 | |||||||||
| Expr14572 | |||||||||
| Expr1010552 | |||||||||
| Expr1038157 | |||||||||
| Expr1152327 | |||||||||
| Expr2015401 | |||||||||
| Expr2033635 | |||||||||
| Drives_construct | WBCnstr00026202 | ||||||||
| WBCnstr00039330 | |||||||||
| Construct_product | WBCnstr00026202 | ||||||||
| WBCnstr00039330 | |||||||||
| Antibody | WBAntibody00002750 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (187) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | IV | Position | 3.33774 | Error | 6.6e-05 | |||
| Positive | Positive_clone | F55G1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027235 | ||||||||
| WBPaper00032153 | |||||||||
| WBPaper00032519 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044471 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055650 | |||||||||
| WBPaper00060892 | |||||||||
| WBPaper00063102 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
