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WormBase Tree Display for Gene: WBGene00018747

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Name Class

WBGene00018747SMapS_parentSequenceF53C3
IdentityVersion1
NameSequence_nameF53C3.3
Molecular_nameF53C3.3
F53C3.3.1
CE35939
Other_nameCELE_F53C3.3Accession_evidenceNDBBX284602
Public_nameF53C3.3
DB_infoDatabaseAceViewgene2E195
WormQTLgeneWBGene00018747
WormFluxgeneWBGene00018747
NDBlocus_tagCELE_F53C3.3
PanthergeneCAEEL|WormBase=WBGene00018747|UniProtKB=Q9TXT6
familyPTHR47520
NCBIgene173732
RefSeqproteinNM_062290.5
TREEFAMTREEFAM_IDTF316474
TrEMBLUniProtAccQ9TXT6
UniProt_GCRPUniProtAccQ9TXT6
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:00WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (49)
RNASeq_FPKM (74)
GO_annotation00097256
Contained_in_operonCEOP2112
Ortholog (24)
Paralog (16)
Structured_descriptionAutomated_descriptionPredicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF53C3.3
Corresponding_CDS_historyF53C3.3:wp111
Corresponding_transcriptF53C3.3.1
Associated_featureWBsf987405
WBsf987406
WBsf221064
WBsf221065
Experimental_infoRNAi_resultWBRNAi00033553Inferred_automaticallyRNAi_primary
WBRNAi00015500Inferred_automaticallyRNAi_primary
WBRNAi00048112Inferred_automaticallyRNAi_primary
Expr_patternExpr1026974
Expr1038075
Expr1151923
Expr2004053
Expr2022277
Drives_constructWBCnstr00026298
Construct_productWBCnstr00026298
Microarray_results (16)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:A-class-motor-neurons_larva_enriched
WBPaper00037950:A-class-motor-neurons_larva_SelectivelyEnriched
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_larva_enriched
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_larva_enriched
WBPaper00037950:glr-1(+)-neurons_larva_SelectivelyEnriched
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044260:nicotic-acid_downregulated
WBPaper00045390:ubc-9(RNAi)_downregulated
WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
WBPaper00045974:NSM_enriched_totalRNA_tiling
WBPaper00046121:ecdoderm_unique
WBPaper00048988:daf-2(e1370)_downregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049377:MWCNT_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050843:sesamin_downregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:hypodermis_enriched
WBPaper00050990:hypodermis_expressed
WBPaper00051257:Levamisole_upregulated
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00051558:aging_regulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053771:up_at_24h-NaCl
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053909:N2_vs_CB4856_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:Metformin_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055565:AVK_enriched
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058725:sftb-1(cer39)_upregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060634:fhod-1(tm2363)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060764:swsn-1(os22ts)_upregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061527:ldb-1_2877-scd-1_3086
WBPaper00061753:csr-1(tor159)_downregulated_20C
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062103:neuron_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062497:xpf-1(tm2842)_upregulated
WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
WBPaper00064158:xpo-1(RNAi)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064871:hypoxia_downregulated_F1
WBPaper00065029:cadmium_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065560:E.coli-HB101_downregulated_F3
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065841:74_0
WBPaper00065841:86_0
WBPaper00065841:97_0
WBPaper00065841:103_0
WBPaper00065841:114_0
WBPaper00065841:129_0
WBPaper00065841:131_0
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00065995:M.humicola-extract_downregulated_N2
WBPaper00066232:ash-2(RNAi)_upregulated_WT
cgc4489_group_17
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00027111:rde-3(r459)_upregulated
WBPaper00030839:Larval_A_Class
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00031003:hlh_1_enriched
WBPaper00031252:AIN-1_IP_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00033099:organophosphorus_pesticide_regulated
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00046639:tyrosol_upregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00048563:L1_DD_enriched
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_upregulated
WBPaper00053236:Starvation_regulated_N2
InteractionWBInteraction000160586
WBInteraction000230757
WBInteraction000303689
WBInteraction000341446
WBInteraction000362665
WBInteraction000430833
WBInteraction000454592
Map_infoPositivePositive_cloneF53C3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII-5.98073
ReferenceWBPaper00033099
MethodGene