WormBase Tree Display for Gene: WBGene00018424
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| WBGene00018424 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pgph-2 | Person_evidence | WBPerson1352 | |||||
| Sequence_name | F44E7.2 | ||||||||
| Molecular_name | F44E7.2 | ||||||||
| F44E7.2.1 | |||||||||
| CE17072 | |||||||||
| F44E7.2.2 | |||||||||
| Other_name | CELE_F44E7.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pgph-2 | ||||||||
| DB_info | Database | AceView | gene | 5G251 | |||||
| WormQTL | gene | WBGene00018424 | |||||||
| WormFlux | gene | WBGene00018424 | |||||||
| NDB | locus_tag | CELE_F44E7.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018424|UniProtKB=O16247 | |||||||
| family | PTHR19288 | ||||||||
| NCBI | gene | 178965 | |||||||
| RefSeq | protein | NM_072111.7 | |||||||
| TrEMBL | UniProtAcc | O16247 | |||||||
| UniProt_GCRP | UniProtAcc | O16247 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 06 Aug 2018 15:31:57 | WBPerson1983 | Name_change | CGC_name | pgph-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pgph | ||||||||
| Allele (101) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027569 | ||||||||
| 00027570 | |||||||||
| 00027571 | |||||||||
| 00027572 | |||||||||
| 00123574 | |||||||||
| Ortholog (79) | |||||||||
| Paralog | WBGene00007548 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016664 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016892 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019522 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019604 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable phosphatase activity. Predicted to be located in cytoplasm. Is an ortholog of human PDXP (pyridoxal phosphatase) and PGP (phosphoglycolate phosphatase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F44E7.2 | |||||||
| Corresponding_transcript | F44E7.2.1 | ||||||||
| F44E7.2.2 | |||||||||
| Other_sequence (59) | |||||||||
| Associated_feature | WBsf646827 | ||||||||
| WBsf1000083 | |||||||||
| WBsf1000084 | |||||||||
| WBsf1019685 | |||||||||
| WBsf1019686 | |||||||||
| WBsf231798 | |||||||||
| WBsf231799 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Chronogram503 | ||||||||
| Expr6071 | |||||||||
| Expr1037939 | |||||||||
| Expr1151155 | |||||||||
| Expr2003721 | |||||||||
| Expr2021940 | |||||||||
| Drives_construct | WBCnstr00004029 | ||||||||
| WBCnstr00026528 | |||||||||
| Construct_product | WBCnstr00026528 | ||||||||
| Regulate_expr_cluster | WBPaper00065926:pgph-2(overepxreesion)_upregulated | ||||||||
| WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (193) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | V | Position | -1.00324 | |||||
| Positive | Positive_clone | F44E7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062352 | |||||||||
| WBPaper00063033 | |||||||||
| WBPaper00065926 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
