WormBase Tree Display for Gene: WBGene00016892
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| WBGene00016892 | SMap | S_parent | Sequence | C53A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pgph-3 | Person_evidence | WBPerson1352 | |||||
| Sequence_name | C53A3.2 | ||||||||
| Molecular_name | C53A3.2 | ||||||||
| C53A3.2.1 | |||||||||
| CE16942 | |||||||||
| Other_name | CELE_C53A3.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pgph-3 | ||||||||
| DB_info | Database | AceView | gene | 5G242 | |||||
| WormQTL | gene | WBGene00016892 | |||||||
| WormFlux | gene | WBGene00016892 | |||||||
| NDB | locus_tag | CELE_C53A3.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016892|UniProtKB=O44538 | |||||||
| family | PTHR19288 | ||||||||
| NCBI | gene | 178964 | |||||||
| RefSeq | protein | NM_072110.6 | |||||||
| TrEMBL | UniProtAcc | O44538 | |||||||
| UniProt_GCRP | UniProtAcc | O44538 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Name_change | CGC_name | pgph-3 | |||||||
| 2 | 23 Sep 2018 21:25:24 | WBPerson1983 | Name_change | CGC_name | pgph-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pgph | ||||||||
| Allele (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032788 | ||||||||
| 00032789 | |||||||||
| 00032790 | |||||||||
| 00032791 | |||||||||
| 00122398 | |||||||||
| Ortholog (79) | |||||||||
| Paralog | WBGene00007548 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016664 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019522 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019604 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018424 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable phosphatase activity. Predicted to be located in cytoplasm. Is an ortholog of human PDXP (pyridoxal phosphatase) and PGP (phosphoglycolate phosphatase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C53A3.2 | |||||||
| Corresponding_transcript | C53A3.2.1 | ||||||||
| Other_sequence (61) | |||||||||
| Associated_feature | WBsf652649 | ||||||||
| WBsf718314 | |||||||||
| WBsf1019684 | |||||||||
| WBsf233721 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Chronogram840 | ||||||||
| Expr5575 | |||||||||
| Expr1018417 | |||||||||
| Expr1037249 | |||||||||
| Expr1147017 | |||||||||
| Expr2001873 | |||||||||
| Expr2020099 | |||||||||
| Drives_construct | WBCnstr00004425 | ||||||||
| WBCnstr00027722 | |||||||||
| Construct_product | WBCnstr00027722 | ||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (297) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | V | Position | -1.00941 | |||||
| Positive | Positive_clone | C53A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027108 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062352 | |||||||||
| WBPaper00063033 | |||||||||
| WBPaper00065341 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
