WormBase Tree Display for Gene: WBGene00018350
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| WBGene00018350 | SMap | S_parent | Sequence | F42C5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ifo-1 | Paper_evidence | WBPaper00040999 | |||||
| Person_evidence | WBPerson26 | ||||||||
| Sequence_name | F42C5.10 | ||||||||
| Molecular_name | F42C5.10 | ||||||||
| F42C5.10.1 | |||||||||
| CE28393 | |||||||||
| Other_name | ttm-4 | Paper_evidence | WBPaper00038231 | ||||||
| Person_evidence | WBPerson26 | ||||||||
| CELE_F42C5.10 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | ifo-1 | ||||||||
| DB_info | Database | AceView | gene | 4I86 | |||||
| WormQTL | gene | WBGene00018350 | |||||||
| WormFlux | gene | WBGene00018350 | |||||||
| NDB | locus_tag | CELE_F42C5.10 | |||||||
| NCBI | gene | 177505 | |||||||
| RefSeq | protein | NM_068769.10 | |||||||
| TREEFAM | TREEFAM_ID | TF351185 | |||||||
| TrEMBL | UniProtAcc | Q20330 | |||||||
| UniProt_GCRP | UniProtAcc | Q20330 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Apr 2011 13:31:47 | WBPerson2970 | Name_change | CGC_name | ttm-4 | ||||
| 3 | 04 Oct 2013 12:25:51 | WBPerson2970 | Name_change | CGC_name | ifo-1 | ||||
| Other_name | ttm-4 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ifo | ||||||||
| Allele (88) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (20) | |||||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell; intestine; pharyngeal muscle cell; and sensory neurons based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on tiling array; microarray; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including hydrogen sulfide; rotenone; and D-glucose based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F42C5.10 | |||||||
| Corresponding_transcript | F42C5.10.1 | ||||||||
| Other_sequence | FD517035.1 | ||||||||
| CSC02210_1 | |||||||||
| CGC00222_1 | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr10040 | ||||||||
| Expr1016486 | |||||||||
| Expr1037901 | |||||||||
| Expr1150948 | |||||||||
| Expr2012695 | |||||||||
| Expr2030931 | |||||||||
| Drives_construct | WBCnstr00014571 | ||||||||
| WBCnstr00015016 | |||||||||
| WBCnstr00026589 | |||||||||
| Construct_product | WBCnstr00015016 | ||||||||
| WBCnstr00019600 | |||||||||
| WBCnstr00026589 | |||||||||
| Regulate_expr_cluster | WBPaper00056167:ifo-1(kc2)_downregulated | ||||||||
| WBPaper00056167:ifo-1(kc2)_upregulated | |||||||||
| Antibody | WBAntibody00002329 | ||||||||
| WBAntibody00002330 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (217) | |||||||||
| Interaction (81) | |||||||||
| Map_info | Map | IV | Position | 3.32254 | Error | 0.000822 | |||
| Positive | Positive_clone | F42C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040999 | |||||||||
| WBPaper00049846 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059330 | |||||||||
| WBPaper00060605 | |||||||||
| WBPaper00061750 | |||||||||
| WBPaper00065331 | |||||||||
| WBPaper00065558 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
