WormBase Tree Display for Gene: WBGene00018350

WBGene00018350 SMap: S_parent: Sequence: F42C5
  Identity: Version: 3
    Name: CGC_name: ifo-1 Paper_evidence: WBPaper00040999
          Person_evidence: WBPerson26
      Sequence_name: F42C5.10
      Molecular_name: F42C5.10
        F42C5.10.1
        CE28393
      Other_name: ttm-4 Paper_evidence: WBPaper00038231
          Person_evidence: WBPerson26
        CELE_F42C5.10 Accession_evidence: NDB BX284604
      Public_name: ifo-1
    DB_info: Database: AceView gene 4I86
        WormQTL gene WBGene00018350
        WormFlux gene WBGene00018350
        NDB locus_tag CELE_F42C5.10
        NCBI gene 177505
        RefSeq protein NM_068769.10
        TREEFAM TREEFAM_ID TF351185
        TrEMBL UniProtAcc Q20330
        UniProt_GCRP UniProtAcc Q20330
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:00 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Apr 2011 13:31:47 WBPerson2970 Name_change: CGC_name: ttm-4
        3 04 Oct 2013 12:25:51 WBPerson2970 Name_change: CGC_name: ifo-1
                Other_name: ttm-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ifo
    Allele: WBVar01482051
      WBVar01729805
      WBVar01729806
      WBVar01729807
      WBVar01729808
      WBVar01729809
      WBVar01729810
      WBVar01729811
      WBVar00428524
      WBVar00428525
      WBVar00428526
      WBVar00428527
      WBVar00428528
      WBVar00428529
      WBVar00428530
      WBVar00428531
      WBVar00428532
      WBVar00428533
      WBVar00276555
      WBVar01499395
      WBVar01499396
      WBVar01453064
      WBVar02020868
      WBVar02020869
      WBVar02036932
      WBVar01493542
      WBVar01710256
      WBVar00920753
      WBVar00920754
      WBVar00920755
      WBVar00920756
      WBVar00920757
      WBVar00920758
      WBVar01499633
      WBVar00920759
      WBVar00920760
      WBVar00920761
      WBVar00920762
      WBVar00920763
      WBVar00920764
      WBVar00920765
      WBVar00920766
      WBVar00920767
      WBVar00920768
      WBVar00920769
      WBVar00920770
      WBVar00920771
      WBVar00920772
      WBVar00920773
      WBVar00920774
      WBVar00920775
      WBVar00920776
      WBVar00920777
      WBVar00920778
      WBVar00920779
      WBVar00920780
      WBVar00920781
      WBVar00920782
      WBVar00920783
      WBVar00920784
      WBVar02151565
      WBVar00920785
      WBVar00920786
      WBVar00920787
      WBVar00920788
      WBVar00920789
      WBVar00920790
      WBVar00920791
      WBVar00920792
      WBVar00920793
      WBVar00920794
      WBVar00920795
      WBVar00920796
      WBVar00920798
      WBVar00920799
      WBVar00920800
      WBVar01794808
      WBVar00920801
      WBVar01794809
      WBVar00298667
      WBVar00920802
      WBVar00920803
      WBVar00298668
      WBVar00920804
      WBVar00920805
      WBVar01500245
      WBVar02125052
      WBVar02125053
    RNASeq_FPKM (74)
    Ortholog (20)
    Structured_description: Automated_description: Enriched in head mesodermal cell; intestine; pharyngeal muscle cell; and sensory neurons based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on tiling array; microarray; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including hydrogen sulfide; rotenone; and D-glucose based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domain: Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F42C5.10
    Corresponding_transcript: F42C5.10.1
    Other_sequence: FD517035.1
      CSC02210_1
      CGC00222_1
    Associated_feature (12)
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr10040
      Expr1016486
      Expr1037901
      Expr1150948
      Expr2012695
      Expr2030931
    Drives_construct: WBCnstr00014571
      WBCnstr00015016
      WBCnstr00026589
    Construct_product: WBCnstr00015016
      WBCnstr00019600
      WBCnstr00026589
    Regulate_expr_cluster: WBPaper00056167:ifo-1(kc2)_downregulated
      WBPaper00056167:ifo-1(kc2)_upregulated
    Antibody: WBAntibody00002329
      WBAntibody00002330
    Microarray_results (18)
    Expression_cluster (217)
    Interaction (81)
  Map_info: Map: IV Position: 3.32254 Error: 0.000822
    Positive: Positive_clone: F42C5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00040999
    WBPaper00049846
    WBPaper00055090
    WBPaper00059330
    WBPaper00060605
    WBPaper00061750
    WBPaper00065331
    WBPaper00065558
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene