WormBase Tree Display for Gene: WBGene00018326
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| WBGene00018326 | SMap | S_parent | Sequence | F42A6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | cyp-25A5 | ||||||||
| Sequence_name | F42A6.4 | |||||||||
| Molecular_name | F42A6.4 | |||||||||
| Other_name | CELE_F42A6.4 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | cyp-25A5 | |||||||||
| DB_info | Database | AceView | gene | 4E88 | ||||||
| WormQTL | gene | WBGene00018326 | ||||||||
| WormFlux | gene | WBGene00018326 | ||||||||
| NDB | locus_tag | CELE_F42A6.4 | ||||||||
| NCBI | gene | 185648 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 21 Sep 2004 09:38:16 | WBPerson1971 | Name_change | CGC_name | cyp-25A5 | |||||
| 3 | 27 Sep 2013 09:37:59 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | cyp | |||||||||
| Allele (38) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00039199 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| WBGene00039200 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00069284 | Caenorhabditis remanei | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| WBGene00150531 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| Paralog | WBGene00007963 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00007964 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| WBGene00007967 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| WBGene00014697 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| Structured_description | Automated_description | Enriched in OLL; PVD; and sensory neurons based on microarray and RNA-seq studies. Is affected by several genes including daf-16; eat-2; and sir-2.1 based on RNA-seq; proteomic; and microarray studies. Is affected by six chemicals including multi-walled carbon nanotube; Sodium Chloride; and Rifampin based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F42A6.4:wp239 | ||||||||
| Corresponding_pseudogene | F42A6.4 | |||||||||
| Other_sequence | PPC10222_1 | |||||||||
| Associated_feature | WBsf651696 | |||||||||
| Experimental_info | Expr_pattern | Expr1150928 | ||||||||
| Microarray_results | SMD_F42A6.4 | |||||||||
| A_12_P100026 | ||||||||||
| GPL3518_CE17056 | ||||||||||
| GPL8304_CE_WBGene00018326_A | ||||||||||
| GPL8673_F42A6_4P00036 | ||||||||||
| Expression_cluster (34) | ||||||||||
| Interaction | WBInteraction000105787 | |||||||||
| WBInteraction000140756 | ||||||||||
| WBInteraction000174713 | ||||||||||
| WBInteraction000230599 | ||||||||||
| WBInteraction000235062 | ||||||||||
| WBInteraction000259490 | ||||||||||
| WBInteraction000283632 | ||||||||||
| WBInteraction000303118 | ||||||||||
| WBInteraction000341305 | ||||||||||
| WBInteraction000341306 | ||||||||||
| Map_info | Map | IV | Position | -4.72172 | Error | 0.013432 | ||||
| Positive | Positive_clone | F42A6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00038491 | |||||||||
| WBPaper00042257 | ||||||||||
| WBPaper00065080 | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
