WormBase Tree Display for Gene: WBGene00018102

WBGene00018102 SMap: S_parent: Sequence: F36H5
  Identity: Version: 2
    Name: CGC_name: math-28 Person_evidence: WBPerson655
      Sequence_name: F36H5.3
      Molecular_name: F36H5.3a
        F36H5.3a.1
        CE35525
        F36H5.3b
        CE09960
        F36H5.3b.1
      Other_name: CELE_F36H5.3 Accession_evidence: NDB BX284602
      Public_name: math-28
    DB_info: Database: WormQTL gene WBGene00018102
        SignaLink protein WBGene00018102
        WormFlux gene WBGene00018102
        NDB locus_tag CELE_F36H5.3
        Panther gene CAEEL|WormBase=WBGene00018102|UniProtKB=Q2L6V3
          family PTHR46308
        NCBI gene 185383
        RefSeq protein NM_001047308.1
            NM_001047307.3
        TREEFAM TREEFAM_ID TF322050
        TrEMBL UniProtAcc Q2L6V3
            P91298
        UniProt_GCRP UniProtAcc Q2L6V3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 17:54:47 WBPerson2970 Name_change: CGC_name: math-28
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: math
    Allele (95)
    RNASeq_FPKM (74)
    Ortholog: WBGene00154588 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00143314 Caenorhabditis brenneri From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19300 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19304 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      chrII_pilon.g3468 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (85)
    Structured_description: Automated_description: Enriched in several structures, including ABplpapppa; ABplpppppp; ABprpppppp; dopaminergic neurons; and mechanosensory neurons based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including Tunicamycin; Sodium Chloride; and metformin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F36H5.3a
      F36H5.3b
    Corresponding_CDS_history: F36H5.3:wp107
      F36H5.3:wp153
    Corresponding_transcript: F36H5.3a.1
      F36H5.3b.1
    Associated_feature: WBsf986808
  Experimental_info: RNAi_result: WBRNAi00014456 Inferred_automatically: RNAi_primary
      WBRNAi00046542 Inferred_automatically: RNAi_primary
      WBRNAi00031884 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015608
      Expr1150434
      Expr2013404
      Expr2031638
    Microarray_results (22)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00045050:csr-1(hypomorph)_upregulated
      WBPaper00045050:drh-3 (ne4253)_upregulated
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045401:N.parisii_8h_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050163:let-418(RNAi)_downregulated_100-cell-embryo
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00051558:aging_regulated
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:Metformin_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:Body_wall_muscle
      WBPaper00061340:Parent_of_K_Kprime
      WBPaper00061340:Parent_of_tail_spike_and_hyp10
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:C17H1.6-C17H1.13
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-15B(we23)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00065029:cadmium_upregulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065086:N2_N.parisii_regulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_9
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00032948:StarveUp4
      WBPaper00035227:heat_shock_regulated
      WBPaper00040116:pRJ-FR.5_up_regulated
      WBPaper00040876:mir-35_upregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045294:50uM_DBAA_downregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_N2
    SAGE_tag: SAGE:ttgaaattta Strand: Sense
        Unambiguously_mapped
      SAGE:aagtccttct Strand: Antisense
      SAGE:ttggcaatat Strand: Antisense
      SAGE:gagaaggact Strand: Sense
        Unambiguously_mapped
      SAGE:aataaacctc Strand: Antisense
      SAGE:gtttttttca Strand: Antisense
      SAGE:tgaaaattaa Strand: Sense
        Unambiguously_mapped
      SAGE:aataaacctcacacaag Strand: Antisense
      SAGE:agagagcagg Strand: Antisense
      SAGE:gaatctcaaa Strand: Antisense
    Interaction: WBInteraction000192087
      WBInteraction000338149
      WBInteraction000352732
      WBInteraction000365770
      WBInteraction000413487
  Map_info: Map: II Position: -14.4752 Error: 0.004334
    Positive: Positive_clone: F36H5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene