WormBase Tree Display for Gene: WBGene00018102
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| WBGene00018102 | SMap | S_parent | Sequence | F36H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | math-28 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F36H5.3 | ||||||||
| Molecular_name | F36H5.3a | ||||||||
| F36H5.3a.1 | |||||||||
| CE35525 | |||||||||
| F36H5.3b | |||||||||
| CE09960 | |||||||||
| F36H5.3b.1 | |||||||||
| Other_name | CELE_F36H5.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | math-28 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00018102 | |||||
| SignaLink | protein | WBGene00018102 | |||||||
| WormFlux | gene | WBGene00018102 | |||||||
| NDB | locus_tag | CELE_F36H5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018102|UniProtKB=Q2L6V3 | |||||||
| family | PTHR46308 | ||||||||
| NCBI | gene | 185383 | |||||||
| RefSeq | protein | NM_001047308.1 | |||||||
| NM_001047307.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF322050 | |||||||
| TrEMBL | UniProtAcc | Q2L6V3 | |||||||
| P91298 | |||||||||
| UniProt_GCRP | UniProtAcc | Q2L6V3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Dec 2005 17:54:47 | WBPerson2970 | Name_change | CGC_name | math-28 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | math | ||||||||
| Allele | WBVar00041826 | ||||||||
| WBVar00707545 | |||||||||
| WBVar00707546 | |||||||||
| WBVar00707547 | |||||||||
| WBVar01499702 | |||||||||
| WBVar00041831 | |||||||||
| WBVar00707548 | |||||||||
| WBVar00707549 | |||||||||
| WBVar00707550 | |||||||||
| WBVar00707551 | |||||||||
| WBVar02120604 | |||||||||
| WBVar00041836 | |||||||||
| WBVar02123182 | |||||||||
| WBVar00707552 | |||||||||
| WBVar00707553 | |||||||||
| WBVar00707554 | |||||||||
| WBVar00041841 | |||||||||
| WBVar00707555 | |||||||||
| WBVar00707556 | |||||||||
| WBVar00707557 | |||||||||
| WBVar00041846 | |||||||||
| WBVar00707558 | |||||||||
| WBVar02121716 | |||||||||
| WBVar00041851 | |||||||||
| WBVar00707559 | |||||||||
| WBVar00707560 | |||||||||
| WBVar02123007 | |||||||||
| WBVar00041856 | |||||||||
| WBVar02121537 | |||||||||
| WBVar00041861 | |||||||||
| WBVar00041866 | |||||||||
| WBVar00041871 | |||||||||
| WBVar02122097 | |||||||||
| WBVar00041876 | |||||||||
| WBVar00041881 | |||||||||
| WBVar01534624 | |||||||||
| WBVar00041886 | |||||||||
| WBVar01534625 | |||||||||
| WBVar01534626 | |||||||||
| WBVar01534627 | |||||||||
| WBVar01534628 | |||||||||
| WBVar01534629 | |||||||||
| WBVar01500106 | |||||||||
| WBVar00236189 | |||||||||
| WBVar00236190 | |||||||||
| WBVar00236191 | |||||||||
| WBVar02124326 | |||||||||
| WBVar02121946 | |||||||||
| WBVar01498306 | |||||||||
| WBVar02124543 | |||||||||
| WBVar02122524 | |||||||||
| WBVar00091181 | |||||||||
| WBVar01499649 | |||||||||
| WBVar02122773 | |||||||||
| WBVar01933613 | |||||||||
| WBVar01933614 | |||||||||
| WBVar01933615 | |||||||||
| WBVar01933616 | |||||||||
| WBVar01933617 | |||||||||
| WBVar02121124 | |||||||||
| WBVar00041781 | |||||||||
| WBVar00357795 | |||||||||
| WBVar00357796 | |||||||||
| WBVar00357797 | |||||||||
| WBVar00357798 | |||||||||
| WBVar00041786 | |||||||||
| WBVar00357799 | |||||||||
| WBVar00041791 | |||||||||
| WBVar00357800 | |||||||||
| WBVar00357801 | |||||||||
| WBVar00098507 | |||||||||
| WBVar00098508 | |||||||||
| WBVar00357802 | |||||||||
| WBVar00357803 | |||||||||
| WBVar00098509 | |||||||||
| WBVar00041796 | |||||||||
| WBVar00098510 | |||||||||
| WBVar00041801 | |||||||||
| WBVar00098511 | |||||||||
| WBVar00098512 | |||||||||
| WBVar00098513 | |||||||||
| WBVar00041806 | |||||||||
| WBVar00098514 | |||||||||
| WBVar00091057 | |||||||||
| WBVar00098515 | |||||||||
| WBVar00098516 | |||||||||
| WBVar00041811 | |||||||||
| WBVar02124456 | |||||||||
| WBVar02122433 | |||||||||
| WBVar00041816 | |||||||||
| WBVar02120776 | |||||||||
| WBVar00707542 | |||||||||
| WBVar00041821 | |||||||||
| WBVar00707543 | |||||||||
| WBVar00707544 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00154588 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||
| WBGene00143314 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold630.g19300 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold630.g19304 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g3468 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (85) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABplpapppa; ABplpppppp; ABprpppppp; dopaminergic neurons; and mechanosensory neurons based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including Tunicamycin; Sodium Chloride; and metformin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F36H5.3a | |||||||
| F36H5.3b | |||||||||
| Corresponding_CDS_history | F36H5.3:wp107 | ||||||||
| F36H5.3:wp153 | |||||||||
| Corresponding_transcript | F36H5.3a.1 | ||||||||
| F36H5.3b.1 | |||||||||
| Associated_feature | WBsf986808 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00014456 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046542 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031884 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015608 | ||||||||
| Expr1150434 | |||||||||
| Expr2013404 | |||||||||
| Expr2031638 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (134) | |||||||||
| SAGE_tag | SAGE:ttgaaattta | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:aagtccttct | Strand | Antisense | |||||||
| SAGE:ttggcaatat | Strand | Antisense | |||||||
| SAGE:gagaaggact | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aataaacctc | Strand | Antisense | |||||||
| SAGE:gtttttttca | Strand | Antisense | |||||||
| SAGE:tgaaaattaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aataaacctcacacaag | Strand | Antisense | |||||||
| SAGE:agagagcagg | Strand | Antisense | |||||||
| SAGE:gaatctcaaa | Strand | Antisense | |||||||
| Interaction | WBInteraction000192087 | ||||||||
| WBInteraction000338149 | |||||||||
| WBInteraction000352732 | |||||||||
| WBInteraction000365770 | |||||||||
| WBInteraction000413487 | |||||||||
| Map_info | Map | II | Position | -14.4752 | Error | 0.004334 | |||
| Positive | Positive_clone | F36H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
